Literature DB >> 29106396

Purinyl-cobamide is a native prosthetic group of reductive dehalogenases.

Jun Yan1,2,3,4,5, Meng Bi1, Allen K Bourdon6, Abigail T Farmer6, Po-Hsiang Wang7, Olivia Molenda7, Andrew T Quaile7, Nannan Jiang3,4,5,8, Yi Yang3,9, Yongchao Yin1, Burcu Şimşir3,9, Shawn R Campagna6, Elizabeth A Edwards7, Frank E Löffler1,3,4,5,8,9,10.   

Abstract

Cobamides such as vitamin B12 are structurally conserved, cobalt-containing tetrapyrrole biomolecules that have essential biochemical functions in all domains of life. In organohalide respiration, a vital biological process for the global cycling of natural and anthropogenic organohalogens, cobamides are the requisite prosthetic groups for carbon-halogen bond-cleaving reductive dehalogenases. This study reports the biosynthesis of a new cobamide with unsubstituted purine as the lower base and assigns unsubstituted purine a biological function by demonstrating that Coα-purinyl-cobamide (purinyl-Cba) is the native prosthetic group in catalytically active tetrachloroethene reductive dehalogenases of Desulfitobacterium hafniense. Cobamides featuring different lower bases are not functionally equivalent, and purinyl-Cba elicits different physiological responses in corrinoid-auxotrophic, organohalide-respiring bacteria. Given that cobamide-dependent enzymes catalyze key steps in essential metabolic pathways, the discovery of a novel cobamide structure and the realization that lower bases can effectively modulate enzyme activities generate opportunities to manipulate functionalities of microbiomes.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 29106396      PMCID: PMC6081238          DOI: 10.1038/nchembio.2512

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  49 in total

1.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Authors:  Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

2.  A study of the metabolism of purine riboside.

Authors:  M P GORDON; G B BROWN
Journal:  J Biol Chem       Date:  1956-06       Impact factor: 5.157

Review 3.  Vitamin B12-derivatives-enzyme cofactors and ligands of proteins and nucleic acids.

Authors:  Karl Gruber; Barbara Puffer; Bernhard Kräutler
Journal:  Chem Soc Rev       Date:  2011-06-20       Impact factor: 54.564

4.  The genetic basis for bacterial mercury methylation.

Authors:  Jerry M Parks; Alexander Johs; Mircea Podar; Romain Bridou; Richard A Hurt; Steven D Smith; Stephen J Tomanicek; Yun Qian; Steven D Brown; Craig C Brandt; Anthony V Palumbo; Jeremy C Smith; Judy D Wall; Dwayne A Elias; Liyuan Liang
Journal:  Science       Date:  2013-02-07       Impact factor: 47.728

5.  Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates.

Authors:  Po-Hsiang Wang; Shuiquan Tang; Kayla Nemr; Robert Flick; Jun Yan; Radhakrishnan Mahadevan; Alexander F Yakunin; Frank E Löffler; Elizabeth A Edwards
Journal:  ISME J       Date:  2016-11-29       Impact factor: 10.302

6.  Analysis of substrate specificity in CobT homologs reveals widespread preference for DMB, the lower axial ligand of vitamin B(12).

Authors:  Amrita B Hazra; Jennifer L A Tran; Terence S Crofts; Michiko E Taga
Journal:  Chem Biol       Date:  2013-09-19

7.  Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi.

Authors:  Frank E Löffler; Jun Yan; Kirsti M Ritalahti; Lorenz Adrian; Elizabeth A Edwards; Konstantinos T Konstantinidis; Jochen A Müller; Heather Fullerton; Stephen H Zinder; Alfred M Spormann
Journal:  Int J Syst Evol Microbiol       Date:  2012-04-27       Impact factor: 2.747

8.  The corrinoid cofactor of reductive dehalogenases affects dechlorination rates and extents in organohalide-respiring Dehalococcoides mccartyi.

Authors:  Jun Yan; Burcu Şimşir; Abigail T Farmer; Meng Bi; Yi Yang; Shawn R Campagna; Frank E Löffler
Journal:  ISME J       Date:  2015-11-10       Impact factor: 10.302

9.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

10.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

View more
  17 in total

1.  Retroconversion of estrogens into androgens by bacteria via a cobalamin-mediated methylation.

Authors:  Po-Hsiang Wang; Yi-Lung Chen; Sean Ting-Shyang Wei; Kan Wu; Tzong-Huei Lee; Tien-Yu Wu; Yin-Ru Chiang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-17       Impact factor: 11.205

2.  Flexible Cobamide Metabolism in Clostridioides (Clostridium) difficile 630 Δerm.

Authors:  Amanda N Shelton; Xun Lyu; Michiko E Taga
Journal:  J Bacteriol       Date:  2020-01-02       Impact factor: 3.490

3.  Ultrastructure of Organohalide-Respiring Dehalococcoidia Revealed by Cryo-Electron Tomography.

Authors:  Danielle L Sexton; Gao Chen; Fadime Kara Murdoch; Ameena Hashimi; Frank E Löffler; Elitza I Tocheva
Journal:  Appl Environ Microbiol       Date:  2021-11-17       Impact factor: 5.005

4.  Heterologous Expression of Active Dehalobacter Respiratory Reductive Dehalogenases in Escherichia coli.

Authors:  Katherine J Picott; Robert Flick; Elizabeth A Edwards
Journal:  Appl Environ Microbiol       Date:  2021-12-01       Impact factor: 5.005

5.  Direct Cobamide Remodeling via Additional Function of Cobamide Biosynthesis Protein CobS from Vibrio cholerae.

Authors:  Amy T Ma; Joris Beld
Journal:  J Bacteriol       Date:  2021-07-08       Impact factor: 3.490

6.  Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge.

Authors:  Sean Ting-Shyang Wei; Yu-Wei Wu; Tzong-Huei Lee; Yi-Shiang Huang; Cheng-Yu Yang; Yi-Lung Chen; Yin-Ru Chiang
Journal:  mSystems       Date:  2018-10-30       Impact factor: 6.496

7.  Naturally occurring cobalamin (B12) analogs can function as cofactors for human methylmalonyl-CoA mutase.

Authors:  Olga M Sokolovskaya; Tanja Plessl; Henry Bailey; Sabrina Mackinnon; Matthias R Baumgartner; Wyatt W Yue; D Sean Froese; Michiko E Taga
Journal:  Biochimie       Date:  2020-07-10       Impact factor: 4.079

8.  Functional Studies of α-Riboside Activation by the α-Ribazole Kinase (CblS) from Geobacillus kaustophilus.

Authors:  Theodoric A Mattes; Lahiru Malalasekara; Jorge C Escalante-Semerena
Journal:  Biochemistry       Date:  2021-06-09       Impact factor: 3.162

9.  Iron Sulfide Enhanced the Dechlorination of Trichloroethene by Dehalococcoides mccartyi Strain 195.

Authors:  Yaru Li; He-Ping Zhao; Lizhong Zhu
Journal:  Front Microbiol       Date:  2021-06-01       Impact factor: 5.640

10.  Functional Genomics and Phylogenetic Evidence Suggest Genus-Wide Cobalamin Production by the Globally Distributed Marine Nitrogen Fixer Trichodesmium.

Authors:  Nathan G Walworth; Michael D Lee; Christopher Suffridge; Pingping Qu; Fei-Xue Fu; Mak A Saito; Eric A Webb; Sergio A Sañudo-Wilhelmy; David A Hutchins
Journal:  Front Microbiol       Date:  2018-02-13       Impact factor: 5.640

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.