Literature DB >> 29104445

Development of a microbial dose response visualization and modelling application for QMRA modelers and educators.

Mark H Weir1,2,3, Jade Mitchell4, William Flynn5, Joanna M Pope3.   

Abstract

Microbial dose response modelling is vital to a well-characterized microbial risk estimate. Dose response modelling is an inherently multidisciplinary field, which collates knowledge and data from disparate scientific fields. This multidisciplinary nature presents a key challenge to the expansion of microbial dose response modelling into new groups of researchers and modelers. This research employs a dose response optimization R code used in 18 peer-reviewed research studies to develop a multi-functional dose response software. The underlying R code performs an optimization of the two primary dose response models using the MLE method and outputs statistical analyses of the fits and bootstrapped uncertainty information for the models. VizDR (Visual Dose Response) was developed to provide microbial dose response modelling capabilities to a larger audience. VizDR is programmed in JavaScript with underlying Python scripts for intercommunication with Rserve. VizDR allows for dose response model visualization and optimization of a user's own experimental data.

Entities:  

Keywords:  Microbial dose response; Optimization; QMRA; Software; Wiki

Year:  2016        PMID: 29104445      PMCID: PMC5665384          DOI: 10.1016/j.envsoft.2016.11.011

Source DB:  PubMed          Journal:  Environ Model Softw        ISSN: 1364-8152            Impact factor:   5.288


  28 in total

1.  Experiments in feeding adult volunteers with Escherichia coli 55, B5, a coliform organism associated with infant diarrhea.

Authors:  R C JUNE; W W FERGUSON; M T WORFEL
Journal:  Am J Hyg       Date:  1953-03

2.  Quantitative Bayesian predictions of source water concentration for QMRA from presence/absence data for E. coli O157:H7.

Authors:  S R Petterson; N Dumoutier; J F Loret; N J Ashbolt
Journal:  Water Sci Technol       Date:  2009       Impact factor: 1.915

Review 3.  Novel web-based tools combining chemistry informatics, biology and social networks for drug discovery.

Authors:  Moses Hohman; Kellan Gregory; Kelly Chibale; Peter J Smith; Sean Ekins; Barry Bunin
Journal:  Drug Discov Today       Date:  2009-02-11       Impact factor: 7.851

4.  Time-dose-response models for microbial risk assessment.

Authors:  Yin Huang; Charles N Haas
Journal:  Risk Anal       Date:  2009-01-29       Impact factor: 4.000

5.  National primary drinking water regulations: Long Term 1 Enhanced Surface Water Treatment Rule. Final rule.

Authors: 
Journal:  Fed Regist       Date:  2002-01-14

6.  A model for in-vivo delivered dose estimation for inhaled bacillus anthracis spores in humans with interspecies extrapolation.

Authors:  Mark H Weir; Charles N Haas
Journal:  Environ Sci Technol       Date:  2011-06-13       Impact factor: 9.028

7.  An approach for developing a national estimate of waterborne disease due to drinking water and a national estimate model application.

Authors:  Michael Messner; Susan Shaw; Stig Regli; Ken Rotert; Valerie Blank; Jeff Soller
Journal:  J Water Health       Date:  2006       Impact factor: 1.744

8.  Water reclamation redesign for reducing Cryptosporidium risks at a recreational spray park using stochastic models.

Authors:  Mark H Weir; Maria Tereza Pepe Razzolini; Joan B Rose; Yoshifumi Masago
Journal:  Water Res       Date:  2011-10-14       Impact factor: 11.236

9.  Pathogenesis of Escherichia coli diarrhea.

Authors:  H L DuPont; S B Formal; R B Hornick; M J Snyder; J P Libonati; D G Sheahan; E H LaBrec; J P Kalas
Journal:  N Engl J Med       Date:  1971-07-01       Impact factor: 91.245

10.  Development of a dose-response model for SARS coronavirus.

Authors:  Toru Watanabe; Timothy A Bartrand; Mark H Weir; Tatsuo Omura; Charles N Haas
Journal:  Risk Anal       Date:  2010-05-20       Impact factor: 4.000

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  5 in total

1.  A Data Simulation Method to Optimize a Mechanistic Dose-Response Model for Viral Loads of Hepatitis A.

Authors:  Mark H Weir
Journal:  Microb Risk Anal       Date:  2019-11-22

2.  Translating research to policy at the NCSE 2017 symposium "Microbiology of the Built Environment: Implications for Health and Design".

Authors:  Ashleigh Bope; Mark H Weir; Amy Pruden; Michael Morowitz; Jade Mitchell; Karen C Dannemiller
Journal:  Microbiome       Date:  2018-09-15       Impact factor: 14.650

3.  Time to revisit the endpoint dilution assay and to replace the TCID50 as a measure of a virus sample's infection concentration.

Authors:  Daniel Cresta; Donald C Warren; Christian Quirouette; Amanda P Smith; Lindey C Lane; Amber M Smith; Catherine A A Beauchemin
Journal:  PLoS Comput Biol       Date:  2021-10-18       Impact factor: 4.475

4.  Quantitative microbial risk assessment of Greywater on-site reuse.

Authors:  Kuang-Wei Shi; Cheng-Wen Wang; Sunny C Jiang
Journal:  Sci Total Environ       Date:  2018-04-25       Impact factor: 7.963

5.  Evaluation of the 50% Infectious Dose of Human Norovirus Cin-2 in Gnotobiotic Pigs: A Comparison of Classical and Contemporary Methods for Endpoint Estimation.

Authors:  Ashwin K Ramesh; Viviana Parreño; Philip J Schmidt; Shaohua Lei; Weiming Zhong; Xi Jiang; Monica B Emelko; Lijuan Yuan
Journal:  Viruses       Date:  2020-08-28       Impact factor: 5.048

  5 in total

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