Literature DB >> 29103143

DNA hypermethylation enhanced telomerase reverse transcriptase expression in human-induced pluripotent stem cells.

Ken Takasawa1, Yoshikazu Arai1, Mayu Yamazaki-Inoue2, Masashi Toyoda3, Hidenori Akutsu2, Akihiro Umezawa2, Koichiro Nishino4,5.   

Abstract

During reprogramming into human induced pluripotent stem cells (iPSCs), several stem cell marker genes are induced, such as OCT-4, NANOG, SALL4, and TERT. OCT-4, NANOG, and SALL4 gene expression can be regulated by DNA methylation. Their promoters become hypomethylated in iPSCs during reprogramming, leading to their induced expression. However, epigenetic regulation of the TERT gene remains unclear. In this study, we focused on epigenetic regulation of the human TERT gene and identified a differentially methylated region (DMR) at a distal region in the TERT promoter between human iPSCs and their parental somatic cells. Interestingly, the TERT-DMR was highly methylated in iPSCs, but low-level methylation was observed in their parental somatic cells. Region-specific, methylated-promoter assays showed that the methylated TERT-DMR up-regulated the promoter activity in iPSCs. In addition, Lamin B1 accumulated at the TERT-DMR in iPSCs, but not in their parent somatic cells. These results suggested that the TERT transcription was enhanced by DNA methylation at the TERT-DMR via binding to nuclear lamina during reprogramming. Our findings shed light on a new functional aspect of DNA methylation in gene expression.

Entities:  

Keywords:  DNA methylation; Epigenetics; Human TERT gene; Human iPSCs; Lamin B1; Reprogramming

Mesh:

Substances:

Year:  2017        PMID: 29103143     DOI: 10.1007/s13577-017-0190-x

Source DB:  PubMed          Journal:  Hum Cell        ISSN: 0914-7470            Impact factor:   4.174


  35 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  DNA methylation-mediated control of Sry gene expression in mouse gonadal development.

Authors:  Koichiro Nishino; Naoko Hattori; Satoshi Tanaka; Kunio Shiota
Journal:  J Biol Chem       Date:  2004-02-21       Impact factor: 5.157

3.  OTX2 Activity at Distal Regulatory Elements Shapes the Chromatin Landscape of Group 3 Medulloblastoma.

Authors:  Gaylor Boulay; Mary E Awad; Nicolo Riggi; Tenley C Archer; Sowmya Iyer; Wannaporn E Boonseng; Nikki E Rossetti; Beverly Naigles; Shruthi Rengarajan; Angela Volorio; James C Kim; Jill P Mesirov; Pablo Tamayo; Scott L Pomeroy; Martin J Aryee; Miguel N Rivera
Journal:  Cancer Discov       Date:  2017-02-17       Impact factor: 39.397

4.  Tissue-specific DNA methylation in a cluster of rabbit beta-like globin genes.

Authors:  C K Shen; T Maniatis
Journal:  Proc Natl Acad Sci U S A       Date:  1980-11       Impact factor: 11.205

5.  CpG island of rat sphingosine kinase-1 gene: tissue-dependent DNA methylation status and multiple alternative first exons.

Authors:  T Imamura; J Ohgane; S Ito; T Ogawa; N Hattori; S Tanaka; K Shiota
Journal:  Genomics       Date:  2001-08       Impact factor: 5.736

6.  Stage-by-stage change in DNA methylation status of Dnmt1 locus during mouse early development.

Authors:  Yeoung-Gyu Ko; Koichiro Nishino; Naoko Hattori; Yoshikazu Arai; Satoshi Tanaka; Kunio Shiota
Journal:  J Biol Chem       Date:  2005-01-04       Impact factor: 5.157

7.  Menstrual blood-derived cells confer human dystrophin expression in the murine model of Duchenne muscular dystrophy via cell fusion and myogenic transdifferentiation.

Authors:  Chang-Hao Cui; Taro Uyama; Kenji Miyado; Masanori Terai; Satoru Kyo; Tohru Kiyono; Akihiro Umezawa
Journal:  Mol Biol Cell       Date:  2007-02-21       Impact factor: 4.138

Review 8.  The nuclear lamina as a gene-silencing hub.

Authors:  Yuri Y Shevelyov; Dmitry I Nurminsky
Journal:  Curr Issues Mol Biol       Date:  2011-07-28       Impact factor: 2.081

9.  Efficient reprogramming of human and mouse primary extra-embryonic cells to pluripotent stem cells.

Authors:  Shogo Nagata; Masashi Toyoda; Shinpei Yamaguchi; Kunio Hirano; Hatsune Makino; Koichiro Nishino; Yoshitaka Miyagawa; Hajime Okita; Nobutaka Kiyokawa; Masato Nakagawa; Shinya Yamanaka; Hidenori Akutsu; Akihiro Umezawa; Takashi Tada
Journal:  Genes Cells       Date:  2009-11-13       Impact factor: 1.891

Review 10.  Nuclear lamin functions and disease.

Authors:  Veronika Butin-Israeli; Stephen A Adam; Anne E Goldman; Robert D Goldman
Journal:  Trends Genet       Date:  2012-07-12       Impact factor: 11.639

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  9 in total

Review 1.  Stem cells at odds with telomere maintenance and protection.

Authors:  Alex Penev; Marta Markiewicz-Potoczny; Agnel Sfeir; Eros Lazzerini Denchi
Journal:  Trends Cell Biol       Date:  2022-01-18       Impact factor: 21.167

2.  Genomic footprints of activated telomere maintenance mechanisms in cancer.

Authors:  Lina Sieverling; Chen Hong; Sandra D Koser; Philip Ginsbach; Kortine Kleinheinz; Barbara Hutter; Delia M Braun; Isidro Cortés-Ciriano; Ruibin Xi; Rolf Kabbe; Peter J Park; Roland Eils; Matthias Schlesner; Benedikt Brors; Karsten Rippe; David T W Jones; Lars Feuerbach
Journal:  Nat Commun       Date:  2020-02-05       Impact factor: 14.919

Review 3.  Gene-Specific Targeting of DNA Methylation in the Mammalian Genome.

Authors:  Arthur Urbano; Jim Smith; Robert J Weeks; Aniruddha Chatterjee
Journal:  Cancers (Basel)       Date:  2019-10-09       Impact factor: 6.639

4.  Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites.

Authors:  Marco Schmidt; Tiago Maié; Edgar Dahl; Ivan G Costa; Wolfgang Wagner
Journal:  BMC Biol       Date:  2020-11-24       Impact factor: 7.431

Review 5.  Hypoxia in Cell Reprogramming and the Epigenetic Regulations.

Authors:  Nariaki Nakamura; Xiaobing Shi; Radbod Darabi; Yong Li
Journal:  Front Cell Dev Biol       Date:  2021-01-28

6.  Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate Central Nervous System.

Authors:  Sergei Reverdatto; Aparna Prasad; Jamie L Belrose; Xiang Zhang; Morgan A Sammons; Kurt M Gibbs; Ben G Szaro
Journal:  BMC Genomics       Date:  2022-01-04       Impact factor: 3.969

7.  Comprehensive Analysis to Identify the Encoded Gens of Sodium Channels as a Prognostic Biomarker in Hepatocellular Carcinoma.

Authors:  Yan Yan; Wen He; Yonghua Chen; Qiang Li; Jiahao Pan; Yunfei Yuan; Weian Zeng; Dongtai Chen; Wei Xing
Journal:  Front Genet       Date:  2022-01-21       Impact factor: 4.599

Review 8.  Epigenetic Regulation of Optic Nerve Development, Protection, and Repair.

Authors:  Ajay Ashok; Sarita Pooranawattanakul; Wai Lydia Tai; Kin-Sang Cho; Tor P Utheim; Dean M Cestari; Dong Feng Chen
Journal:  Int J Mol Sci       Date:  2022-08-10       Impact factor: 6.208

9.  Contiguous erosion of the inactive X in human pluripotency concludes with global DNA hypomethylation.

Authors:  Prakhar Bansal; Darcy T Ahern; Yuvabharath Kondaveeti; Catherine W Qiu; Stefan F Pinter
Journal:  Cell Rep       Date:  2021-06-08       Impact factor: 9.423

  9 in total

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