Literature DB >> 29100211

Chimeric RNAs and their implications in cancer.

Zi Li1, Fujun Qin2, Hui Li3.   

Abstract

Chimeric RNAs have been believed to be solely produced by gene fusions resulting from chromosomal rearrangement, thus unique features of cancer. Detected chimeric RNAs have also been viewed as surrogates for the presence of gene fusions. However, more and more research has demonstrated that chimeric RNAs in general are not a hallmark of cancer, but rather widely present in non-cancerous cells and tissues. At the same time, they may be produced by other mechanisms other than chromosomal rearrangement. The field of non-canonical chimeric RNAs is still in its infancy, with many challenges ahead, including the lack of a unified terminology. However, we believe that these non-canonical chimeric RNAs will have significant impacts in cancer detection and treatment.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29100211      PMCID: PMC5869076          DOI: 10.1016/j.gde.2017.10.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  71 in total

1.  The 409 bp tandem repeat spanning genes yxaK and yxaL is absent from the Bacillus subtilis chromosome.

Authors:  Marie-Agnès Petit; Ken-Ishi Yoshida; Yasutaro Fujita; S Dusko Ehrlich
Journal:  Microbiology (Reading)       Date:  2000-09       Impact factor: 2.777

Review 2.  Chimeric RNAs in cancer and normal physiology.

Authors:  Katarzyna Chwalenia; Loryn Facemire; Hui Li
Journal:  Wiley Interdiscip Rev RNA       Date:  2017-06-07       Impact factor: 9.957

3.  Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing.

Authors:  Kalpana Kannan; Liguo Wang; Jianghua Wang; Michael M Ittmann; Wei Li; Laising Yen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-12       Impact factor: 11.205

4.  TFG, a target of chromosome translocations in lymphoma and soft tissue tumors, fuses to GPR128 in healthy individuals.

Authors:  Andrew Chase; Thomas Ernst; Andreas Fiebig; Andrew Collins; Francis Grand; Philipp Erben; Andreas Reiter; Stefan Schreiber; Nicholas C P Cross
Journal:  Haematologica       Date:  2009-10-01       Impact factor: 9.941

5.  The t(12;21) of acute lymphoblastic leukemia results in a tel-AML1 gene fusion.

Authors:  S P Romana; M Mauchauffé; M Le Coniat; I Chumakov; D Le Paslier; R Berger; O A Bernard
Journal:  Blood       Date:  1995-06-15       Impact factor: 22.113

6.  Widespread Inducible Transcription Downstream of Human Genes.

Authors:  Anna Vilborg; Maria C Passarelli; Therese A Yario; Kazimierz T Tycowski; Joan A Steitz
Journal:  Mol Cell       Date:  2015-07-16       Impact factor: 17.970

Review 7.  Landscape of gene fusions in epithelial cancers: seq and ye shall find.

Authors:  Chandan Kumar-Sinha; Shanker Kalyana-Sundaram; Arul M Chinnaiyan
Journal:  Genome Med       Date:  2015-12-18       Impact factor: 11.117

8.  Recurrent fusion RNA DUS4L-BCAP29 in non-cancer human tissues and cells.

Authors:  Yue Tang; Fujun Qin; Aiqun Liu; Hui Li
Journal:  Oncotarget       Date:  2017-05-09

9.  ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining.

Authors:  Myunggyo Lee; Kyubum Lee; Namhee Yu; Insu Jang; Ikjung Choi; Pora Kim; Ye Eun Jang; Byounggun Kim; Sunkyu Kim; Byungwook Lee; Jaewoo Kang; Sanghyuk Lee
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

10.  Transcriptome sequencing to detect gene fusions in cancer.

Authors:  Christopher A Maher; Chandan Kumar-Sinha; Xuhong Cao; Shanker Kalyana-Sundaram; Bo Han; Xiaojun Jing; Lee Sam; Terrence Barrette; Nallasivam Palanisamy; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-01-11       Impact factor: 49.962

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  12 in total

1.  Functional heritage: the evolution of chimeric RNA into a gene.

Authors:  Hao Wu; Sandeep Singh; Xinrui Shi; Zhongqiu Xie; Emily Lin; Xiaorong Li; Hui Li
Journal:  RNA Biol       Date:  2019-09-29       Impact factor: 4.652

2.  Another lesson from unmapped reads: in-depth analysis of RNA-Seq reads from various horse tissues.

Authors:  Artur Gurgul; Tomasz Szmatoła; Ewa Ocłoń; Igor Jasielczuk; Ewelina Semik-Gurgul; Carrie J Finno; Jessica L Petersen; Rebecca Bellone; Erin N Hales; Tomasz Ząbek; Zbigniew Arent; Małgorzata Kotula-Balak; Monika Bugno-Poniewierska
Journal:  J Appl Genet       Date:  2022-06-07       Impact factor: 2.653

3.  Bridging the gap between reference and real transcriptomes.

Authors:  Antonin Morillon; Daniel Gautheret
Journal:  Genome Biol       Date:  2019-06-03       Impact factor: 13.583

4.  Evaluating a Targeted Cancer Therapy Approach Mediated by RNA trans-Splicing In Vitro and in a Xenograft Model for Epidermolysis Bullosa-Associated Skin Cancer.

Authors:  Katharina Woess; Yuchen Sun; Hanae Morio; Anna Stierschneider; Anna Kaufmann; Stefan Hainzl; Lisa Trattner; Thomas Kocher; Birgit Tockner; Victoria Leb-Reichl; Markus Steiner; Gabriele Brachtl; Andrew P South; Johann W Bauer; Julia Reichelt; Tomomi Furihata; Verena Wally; Ulrich Koller; Josefina Piñón Hofbauer; Christina Guttmann-Gruber
Journal:  Int J Mol Sci       Date:  2022-01-05       Impact factor: 5.923

5.  The Fusion of CLEC12A and MIR223HG Arises from a trans-Splicing Event in Normal and Transformed Human Cells.

Authors:  Bijay P Dhungel; Geoffray Monteuuis; Caroline Giardina; Mehdi S Tabar; Yue Feng; Cynthia Metierre; Sarah Ho; Rajini Nagarajah; Angela R M Fontaine; Jaynish S Shah; Divya Gokal; Charles G Bailey; Ulf Schmitz; John E J Rasko
Journal:  Int J Mol Sci       Date:  2021-11-10       Impact factor: 5.923

6.  The Landscape of Novel Expressed Chimeric RNAs in Rheumatoid Arthritis.

Authors:  Rajesh Detroja; Sumit Mukherjee; Milana Frenkel-Morgenstern
Journal:  Cells       Date:  2022-03-24       Impact factor: 6.600

7.  The relationship between chimeric RNAs and gene fusions: Potential implications of reciprocity in cancer.

Authors:  Justin Elfman; Lam-Phong Pham; Hui Li
Journal:  J Genet Genomics       Date:  2020-06-14       Impact factor: 5.723

8.  Fusion transcript detection using spatial transcriptomics.

Authors:  Stefanie Friedrich; Erik L L Sonnhammer
Journal:  BMC Med Genomics       Date:  2020-08-04       Impact factor: 3.063

9.  A cell-based splicing reporter system to identify regulators of cis-splicing between adjacent genes.

Authors:  Katarzyna Chwalenia; Fujun Qin; Sandeep Singh; Hui Li
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

Review 10.  Fusion Transcripts of Adjacent Genes: New Insights into the World of Human Complex Transcripts in Cancer.

Authors:  Vincenza Barresi; Ilaria Cosentini; Chiara Scuderi; Salvatore Napoli; Virginia Di Bella; Giorgia Spampinato; Daniele Filippo Condorelli
Journal:  Int J Mol Sci       Date:  2019-10-23       Impact factor: 5.923

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