Literature DB >> 29096465

Development of reactive force fields using ab initio molecular dynamics simulation minimally biased to experimental data.

Chen Chen1, Christopher Arntsen1, Gregory A Voth1.   

Abstract

Incorporation of quantum mechanical electronic structure data is necessary to properly capture the physics of many chemical processes. Proton hopping in water, which involves rearrangement of chemical and hydrogen bonds, is one such example of an inherently quantum mechanical process. Standard ab initio molecular dynamics (AIMD) methods, however, do not yet accurately predict the structure of water and are therefore less than optimal for developing force fields. We have instead utilized a recently developed method which minimally biases AIMD simulations to match limited experimental data to develop novel multiscale reactive molecular dynamics (MS-RMD) force fields by using relative entropy minimization. In this paper, we present two new MS-RMD models using such a parameterization: one which employs water with harmonic internal vibrations and another which uses anharmonic water. We show that the newly developed MS-RMD models very closely reproduce the solvation structure of the hydrated excess proton in the target AIMD data. We also find that the use of anharmonic water increases proton hopping, thereby increasing the proton diffusion constant.

Entities:  

Year:  2017        PMID: 29096465      PMCID: PMC5584654          DOI: 10.1063/1.4985903

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  28 in total

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3.  The relative entropy is fundamental to multiscale and inverse thermodynamic problems.

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5.  Coarse-graining errors and numerical optimization using a relative entropy framework.

Authors:  Aviel Chaimovich; M Scott Shell
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

6.  An analysis of hydrated proton diffusion in ab initio molecular dynamics.

Authors:  Ying-Lung Steve Tse; Chris Knight; Gregory A Voth
Journal:  J Chem Phys       Date:  2015-01-07       Impact factor: 3.488

7.  Perspective: How good is DFT for water?

Authors:  Michael J Gillan; Dario Alfè; Angelos Michaelides
Journal:  J Chem Phys       Date:  2016-04-07       Impact factor: 3.488

8.  Role of Presolvation and Anharmonicity in Aqueous Phase Hydrated Proton Solvation and Transport.

Authors:  Rajib Biswas; Ying-Lung Steve Tse; Andrei Tokmakoff; Gregory A Voth
Journal:  J Phys Chem B       Date:  2015-12-01       Impact factor: 2.991

9.  Accurate description of van der Waals complexes by density functional theory including empirical corrections.

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Journal:  J Comput Chem       Date:  2004-09       Impact factor: 3.376

10.  Development of a "First-Principles" Water Potential with Flexible Monomers. III. Liquid Phase Properties.

Authors:  Gregory R Medders; Volodymyr Babin; Francesco Paesani
Journal:  J Chem Theory Comput       Date:  2014-07-08       Impact factor: 6.006

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  3 in total

1.  Understanding and Tracking the Excess Proton in Ab Initio Simulations; Insights from IR Spectra.

Authors:  Chenghan Li; Jessica M J Swanson
Journal:  J Phys Chem B       Date:  2020-06-24       Impact factor: 2.991

2.  Dynamic Protonation Dramatically Affects the Membrane Permeability of Drug-like Molecules.

Authors:  Zhi Yue; Chenghan Li; Gregory A Voth; Jessica M J Swanson
Journal:  J Am Chem Soc       Date:  2019-08-16       Impact factor: 15.419

3.  Correlated dynamics in aqueous proton diffusion.

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