Literature DB >> 26575795

Role of Presolvation and Anharmonicity in Aqueous Phase Hydrated Proton Solvation and Transport.

Rajib Biswas1, Ying-Lung Steve Tse1, Andrei Tokmakoff1, Gregory A Voth1.   

Abstract

Results from condensed phase ab initio molecular dynamics (AIMD) simulations suggest a proton transfer reaction is facilitated by "presolvation" in which the hydronium is transiently solvated by four water molecules, similar to the typical solvation structure of water, by accepting a weak hydrogen bond from the fourth water molecule. A new version 3.2 multistate empirical valence bond (MS-EVB 3.2) model for the hydrated excess proton incorporating this presolvation behavior is therefore developed. The classical MS-EVB simulations show similar structural properties as those of the previous model but with significantly improved diffusive behavior. The inclusion of nuclear quantum effects in the MS-EVB also provides an even better description of the proton diffusion rate. To quantify the influence of anharmonicity, a second model (aMS-EVB 3.2) is developed using the anharmonic aSPC/Fw water model, which provides similar structural properties but improved spectroscopic responses at high frequencies.

Entities:  

Year:  2015        PMID: 26575795     DOI: 10.1021/acs.jpcb.5b09466

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  14 in total

1.  Reactive molecular dynamics models from ab initio molecular dynamics data using relative entropy minimization.

Authors:  Christopher Arntsen; Chen Chen; Gregory A Voth
Journal:  Chem Phys Lett       Date:  2017-04-22       Impact factor: 2.328

2.  Multiscale Simulation Reveals Passive Proton Transport Through SERCA on the Microsecond Timescale.

Authors:  Chenghan Li; Zhi Yue; L Michel Espinoza-Fonseca; Gregory A Voth
Journal:  Biophys J       Date:  2020-08-06       Impact factor: 4.033

3.  Development of reactive force fields using ab initio molecular dynamics simulation minimally biased to experimental data.

Authors:  Chen Chen; Christopher Arntsen; Gregory A Voth
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

4.  Multiscale Simulation of an Influenza A M2 Channel Mutant Reveals Key Features of Its Markedly Different Proton Transport Behavior.

Authors:  Laura C Watkins; William F DeGrado; Gregory A Voth
Journal:  J Am Chem Soc       Date:  2022-01-05       Impact factor: 15.419

5.  Accurate pKa Calculations in Proteins with Reactive Molecular Dynamics Provide Physical Insight Into the Electrostatic Origins of Their Values.

Authors:  Joshua Zuchniarz; Yu Liu; Chenghan Li; Gregory A Voth
Journal:  J Phys Chem B       Date:  2022-09-15       Impact factor: 3.466

6.  Understanding and Tracking the Excess Proton in Ab Initio Simulations; Insights from IR Spectra.

Authors:  Chenghan Li; Jessica M J Swanson
Journal:  J Phys Chem B       Date:  2020-06-24       Impact factor: 2.991

7.  Tracking Aqueous Proton Transfer by Two-Dimensional Infrared Spectroscopy and ab Initio Molecular Dynamics Simulations.

Authors:  Rongfeng Yuan; Joseph A Napoli; Chang Yan; Ondrej Marsalek; Thomas E Markland; Michael D Fayer
Journal:  ACS Cent Sci       Date:  2019-05-23       Impact factor: 14.553

8.  Observing Aqueous Proton Transfer Dynamics.

Authors:  Kieran M Farrell; Martin T Zanni
Journal:  ACS Cent Sci       Date:  2019-07-08       Impact factor: 14.553

9.  Vibrational Relaxation Dynamics of the Core and Outer Part of Proton-Hydration Clusters.

Authors:  Oleksandr O Sofronov; Huib J Bakker
Journal:  J Phys Chem B       Date:  2019-07-12       Impact factor: 2.991

10.  Computationally Efficient Multiscale Reactive Molecular Dynamics to Describe Amino Acid Deprotonation in Proteins.

Authors:  Sangyun Lee; Ruibin Liang; Gregory A Voth; Jessica M J Swanson
Journal:  J Chem Theory Comput       Date:  2016-01-20       Impact factor: 6.006

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