Literature DB >> 29082384

Anafora: A Web-based General Purpose Annotation Tool.

Wei-Te Chen1, Will Styler2.   

Abstract

Anafora is a newly-developed open source web-based text annotation tool built to be lightweight, flexible, easy to use and capable of annotating with a variety of schemas, simple and complex. Anafora allows secure web-based annotation of any plaintext file with both spanned (e.g. named entity or markable) and relation annotations, as well as adjudication for both types of annotation. Anafora offers automatic set assignment and progress-tracking, centralized and human-editable XML annotation schemas, and file-based storage and organization of data in a human-readable single-file XML format.

Entities:  

Year:  2013        PMID: 29082384      PMCID: PMC5657237     

Source DB:  PubMed          Journal:  Proc Conf


  1 in total

1.  Towards comprehensive syntactic and semantic annotations of the clinical narrative.

Authors:  Daniel Albright; Arrick Lanfranchi; Anwen Fredriksen; William F Styler; Colin Warner; Jena D Hwang; Jinho D Choi; Dmitriy Dligach; Rodney D Nielsen; James Martin; Wayne Ward; Martha Palmer; Guergana K Savova
Journal:  J Am Med Inform Assoc       Date:  2013-01-25       Impact factor: 4.497

  1 in total
  7 in total

1.  Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP.

Authors:  Na Hong; Andrew Wen; Majid Rastegar Mojarad; Sunghwan Sohn; Hongfang Liu; Guoqian Jiang
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

2.  Supervised methods to extract clinical events from cardiology reports in Italian.

Authors:  Natalia Viani; Timothy A Miller; Carlo Napolitano; Silvia G Priori; Guergana K Savova; Riccardo Bellazzi; Lucia Sacchi
Journal:  J Biomed Inform       Date:  2019-05-28       Impact factor: 6.317

3.  Automated annotation and classification of BI-RADS assessment from radiology reports.

Authors:  Sergio M Castro; Eugene Tseytlin; Olga Medvedeva; Kevin Mitchell; Shyam Visweswaran; Tanja Bekhuis; Rebecca S Jacobson
Journal:  J Biomed Inform       Date:  2017-04-18       Impact factor: 6.317

4.  An extensive review of tools for manual annotation of documents.

Authors:  Mariana Neves; Jurica Ševa
Journal:  Brief Bioinform       Date:  2021-01-18       Impact factor: 11.622

5.  Doc2Hpo: a web application for efficient and accurate HPO concept curation.

Authors:  Cong Liu; Fabricio Sampaio Peres Kury; Ziran Li; Casey Ta; Kai Wang; Chunhua Weng
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

6.  Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processing (OHNLP) Competition.

Authors:  Feichen Shen; Sijia Liu; Sunyang Fu; Yanshan Wang; Sam Henry; Ozlem Uzuner; Hongfang Liu
Journal:  JMIR Med Inform       Date:  2021-01-27

7.  ANNO: A General Annotation Tool for Bilingual Clinical Note Information Extraction.

Authors:  Kye Hwa Lee; Hyunsung Lee; Jin-Hyeok Park; Yi-Jun Kim; Youngho Lee
Journal:  Healthc Inform Res       Date:  2022-01-31
  7 in total

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