Literature DB >> 29075681

Subject-Specific Structural Parcellations Based on Randomized AB-divergences.

Nicolas Honnorat1, Drew Parker1, Birkan Tunç1, Christos Davatzikos1, Ragini Verma1.   

Abstract

Brain parcellation provides a means to approach the brain in smaller regions. It also affords an appropriate dimensionality reduction in the creation of connectomes. Most approaches to creating connectomes start with registering individual scans to a template, which is then parcellated. Data processing usually ends with the projection of individual scans onto the parcellation for extracting individual biomarkers, such as connectivity signatures. During this process, registration errors can significantly alter the quality of biomarkers. In this paper, we propose to mitigate this issue with a hybrid approach for brain parcellation. We use diffusion MRI (dMRI) based structural connectivity measures to drive the refinement of an anatomical prior parcellation. Our method generates highly coherent structural parcels in native subject space while maintaining interpretability and correspondences across the population. This goal is achieved by registering a population-wide anatomical prior to individual dMRI scan and generating connectivity signatures for each voxel. The anatomical prior is then deformed by re-parcellating the brain according to the similarity between voxel connectivity signatures while constraining the number of parcels. We investigate a broad family of signature similarities known as AB-divergences and explain how a divergence adapted to our segmentation task can be selected. This divergence is used for parcellating a high-resolution dataset using two graph-based methods. The promising results obtained suggest that our approach produces coherent parcels and stronger connectomes than the original anatomical priors.

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Year:  2017        PMID: 29075681      PMCID: PMC5654567          DOI: 10.1007/978-3-319-66182-7_47

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  12 in total

1.  An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest.

Authors:  Rahul S Desikan; Florent Ségonne; Bruce Fischl; Brian T Quinn; Bradford C Dickerson; Deborah Blacker; Randy L Buckner; Anders M Dale; R Paul Maguire; Bradley T Hyman; Marilyn S Albert; Ronald J Killiany
Journal:  Neuroimage       Date:  2006-03-10       Impact factor: 6.556

2.  Sex differences in the structural connectome of the human brain.

Authors:  Madhura Ingalhalikar; Alex Smith; Drew Parker; Theodore D Satterthwaite; Mark A Elliott; Kosha Ruparel; Hakon Hakonarson; Raquel E Gur; Ruben C Gur; Ragini Verma
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

3.  Generation and Evaluation of a Cortical Area Parcellation from Resting-State Correlations.

Authors:  Evan M Gordon; Timothy O Laumann; Babatunde Adeyemo; Jeremy F Huckins; William M Kelley; Steven E Petersen
Journal:  Cereb Cortex       Date:  2014-10-14       Impact factor: 5.357

4.  Automated tract extraction via atlas based Adaptive Clustering.

Authors:  Birkan Tunç; William A Parker; Madhura Ingalhalikar; Ragini Verma
Journal:  Neuroimage       Date:  2014-08-15       Impact factor: 6.556

5.  Groupwise structural parcellation of the whole cortex: A logistic random effects model based approach.

Authors:  Guillermo Gallardo; William Wells; Rachid Deriche; Demian Wassermann
Journal:  Neuroimage       Date:  2017-02-01       Impact factor: 6.556

6.  sGraSP: A graph-based method for the derivation of subject-specific functional parcellations of the brain.

Authors:  N Honnorat; T D Satterthwaite; R E Gur; R C Gur; C Davatzikos
Journal:  J Neurosci Methods       Date:  2016-11-29       Impact factor: 2.390

7.  Group-wise parcellation of the cortex through multi-scale spectral clustering.

Authors:  Sarah Parisot; Salim Arslan; Jonathan Passerat-Palmbach; William M Wells; Daniel Rueckert
Journal:  Neuroimage       Date:  2016-05-15       Impact factor: 6.556

Review 8.  Complex brain networks: graph theoretical analysis of structural and functional systems.

Authors:  Ed Bullmore; Olaf Sporns
Journal:  Nat Rev Neurosci       Date:  2009-02-04       Impact factor: 34.870

9.  Diffusion-weighted imaging tractography-based parcellation of the human parietal cortex and comparison with human and macaque resting-state functional connectivity.

Authors:  Rogier B Mars; Saad Jbabdi; Jérôme Sallet; Jill X O'Reilly; Paula L Croxson; Etienne Olivier; Maryann P Noonan; Caroline Bergmann; Anna S Mitchell; Mark G Baxter; Timothy E J Behrens; Heidi Johansen-Berg; Valentina Tomassini; Karla L Miller; Matthew F S Rushworth
Journal:  J Neurosci       Date:  2011-03-16       Impact factor: 6.167

10.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

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  2 in total

Review 1.  Evaluation of functional MRI-based human brain parcellation: a review.

Authors:  Pantea Moghimi; Anh The Dang; Quan Do; Theoden I Netoff; Kelvin O Lim; Gowtham Atluri
Journal:  J Neurophysiol       Date:  2022-06-08       Impact factor: 2.974

2.  Connectivity-based parcellation of normal and anatomically distorted human cerebral cortex.

Authors:  Stephane Doyen; Peter Nicholas; Anujan Poologaindran; Lewis Crawford; Isabella M Young; Rafeael Romero-Garcia; Michael E Sughrue
Journal:  Hum Brain Mapp       Date:  2021-11-26       Impact factor: 5.038

  2 in total

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