| Literature DB >> 29065660 |
Saruar Alam1, Goo-Rak Kwon1, Ji-In Kim1, Chun-Su Park2.
Abstract
Alzheimer's disease (AD) is a leading cause of dementia, which causes serious health and socioeconomic problems. A progressive neurodegenerative disorder, Alzheimer's causes the structural change in the brain, thereby affecting behavior, cognition, emotions, and memory. Numerous multivariate analysis algorithms have been used for classifying AD, distinguishing it from healthy controls (HC). Efficient early classification of AD and mild cognitive impairment (MCI) from HC is imperative as early preventive care could help to mitigate risk factors. Magnetic resonance imaging (MRI), a noninvasive biomarker, displays morphometric differences and cerebral structural changes. A novel approach for distinguishing AD from HC using dual-tree complex wavelet transforms (DTCWT), principal coefficients from the transaxial slices of MRI images, linear discriminant analysis, and twin support vector machine is proposed here. The prediction accuracy of the proposed method yielded up to 92.65 ± 1.18 over the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, with a specificity of 92.19 ± 1.56 and sensitivity of 93.11 ± 1.29, and 96.68 ± 1.44 over the Open Access Series of Imaging Studies (OASIS) dataset, with a sensitivity of 97.72 ± 2.34 and specificity of 95.61 ± 1.67. The accuracy, sensitivity, and specificity achieved using the proposed method are comparable or superior to those obtained by various conventional AD prediction methods.Entities:
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Year: 2017 PMID: 29065660 PMCID: PMC5576415 DOI: 10.1155/2017/8750506
Source DB: PubMed Journal: J Healthc Eng ISSN: 2040-2295 Impact factor: 2.682
Summary of subject's demographics status.
| AD | Normal | |
|---|---|---|
| Number of subjects | 86 | 86 |
| 43 males | 46 males | |
| 43 females | 40 females | |
| Average age | 77.30 | 76.05 |
| Average education points | 14.65 | 15.93 |
| MMSE | 23.48 | 29.08 |
Statistical OASIS data details used in our learning.
| Factors | Normal | Very mild & mild AD |
|---|---|---|
| Number of patients | 44 | 51 |
| Age | 84.40 (76–96) | 82.11 (76–96) |
| Education | 3.34 (1–5) | 3.13 (1–5) |
| Socioeconomic status | 2.31 (1–5) | 2.82 (1–5) |
| CDR (0.5/1) | 0 | 35/16 |
| MMSE | 28.72 (25–30) | 24.82 (18–30) |
Clinical dementia scale.
| CDR | Rank |
|---|---|
| 0.5 | Very mild dementia |
| 1 | Mild |
| 2 | Moderate |
| 3 | Severe |
Figure 1Flowchart of DTCWT-based classification performance of AD from HC.
Figure 2MR image slice sample (axial slice view after preprocessing).
Figure 3Block diagram for a 3-level DTCWT.
Figure 4PCA implementation for feature reduction.
Confusion matrix for a binary classifier to distinguish between two classes (S1 and S2).
| True class | Predicted class | |
|---|---|---|
| S1 (patients) | S2 (controls) | |
| S1 (patients) | TP | FN |
| S2 (controls) | FP | TN |
Figure 5Bar chart of DTCWT-based classification performance of AD from HC over ADNI dataset.
Figure 6Bar chart of DTCWT-based classification performance of AD from HC over OASIS dataset.
Figure 7The number of principal components versus classification performance graph of proposed method.
Performance evaluation over ADNI dataset.
| Methods | Accuracy | Sensitivity | Specificity | Precision | Recall | f_measure | gmean |
|---|---|---|---|---|---|---|---|
| Proposed | 92.65 ± 1.18 | 93.11 ± 1.29 | 92.19 ± 1.56 | 92.78 ± 1.27 | 93.11 ± 1.29 | 92.63 ± 1.19 | 92.46 ± 1.24 |
| DTCWT+PCA+TSVM | 91.77 ± 0.85 | 92.48 ± 0.89 | 91.13 ± 1.31 | 91.73 ± 0.95 | 92.48 ± 0.89 | 91.72 ± 0.77 | 91.57 ± 0.91 |
Performance evaluation over OASIS dataset.
| Methods | Accuracy | Sensitivity | Specificity | Precision | Recall | f_measure | gmean |
|---|---|---|---|---|---|---|---|
| Proposed | 96.68 ± 1.44 | 97.72 ± 2.34 | 95.61 ± 1.67 | 96.13 ± 1.57 | 97.72 ± 2.34 | 96.76 ± 1.51 | 96.56 ± 1.44 |
| DTCWT+PCA+TSVM | 95.46 ± 1.35 | 97.55 ± 1.26 | 93.36 ± 2.39 | 94.14 ± 2.01 | 97.55 ± 1.26 | 95.61 ± 1.28 | 95.29 ± 1.42 |
Run- and fold-wise classification performance of proposed approach over ADNI dataset.
| Folds | Runs | Run 1 | Run 2 | Run 3 | Run 4 | Run 5 | Run 6 | Run 7 | Run 8 | Run 9 | Run 10 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Fold 1 | 94.44 | 100 | 100 | 100 | 94.44 | 88.8889 | 100 | 87.5 | 94.44 | 100 |
| |
| Fold 2 | 100 | 94.117 | 100 | 88.23 | 82.35 | 94.11 | 81.25 | 94.11 | 94.44 | 88.88 | ||
| Fold 3 | 94.117 | 94.117 | 94.11 | 88.88 | 100 | 82.35 | 100 | 100 | 88.88 | 88.23 | ||
| Fold 4 | 94.117 | 88.235 | 88.88 | 94.11 | 100 | 93.75 | 94.117 | 94.11 | 100 | 82.35 | ||
| Fold 5 | 87.5 | 88.888 | 88.88 | 94.11 | 88.23 | 100 | 93.75 | 100 | 87.5 | 94.44 | ||
| Fold 6 | 100 | 94.117 | 87.5 | 88.88 | 100 | 76.47 | 88.23 | 77.77 | 94.11 | 94.44 | ||
| Fold 7 | 87.5 | 94.117 | 87.5 | 93.75 | 100 | 83.33 | 100 | 94.11 | 82.35 | 93.75 | ||
| Fold 8 | 87.5 | 100 | 100 | 88.88 | 100 | 94.44 | 100 | 83.33 | 87.5 | 94.11 | ||
| Fold 9 | 94.444 | 100 | 94.44 | 94.11 | 88.88 | 94.11 | 100 | 88.235 | 88.888 | 87.5 | ||
| Fold 10 | 94.444 | 83.333 | 83.33 | 94.11 | 82.35 | 100 | 88.88 | 94.117 | 100 | 100 | ||
| Fold-wise accuracy | 93.406 | 93.692 | 92.46 | 92.512 | 93.62 | 90.747 | 94.624 | 91.3317 | 91.813 | 92.37 | ||
Run- and fold-wise classification performance of the DTCWT + PCA + TSVM method over ADNI dataset.
| Folds | Runs | Run 1 | Run 2 | Run 3 | Run 4 | Run 5 | Run 6 | Run 7 | Run 8 | Run 9 | Run 10 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Fold 1 | 88.88 | 94.11 | 94.11 | 87.5 | 87.5 | 77.77 | 75 | 100 | 82.35 | 88.88 |
| |
| Fold 2 | 94.11 | 100 | 100 | 94.44 | 100 | 94.44 | 88.88 | 94.11 | 88.23 | 87.5 | ||
| Fold 3 | 94.11 | 87.5 | 88.23 | 93.75 | 94.11 | 94.11 | 88.88 | 88.23 | 93.75 | 76.47 | ||
| Fold 4 | 93.75 | 82.35 | 88.23 | 88.23 | 100 | 94.11 | 94.11 | 88.23 | 76.47 | 100 | ||
| Fold 5 | 88.88 | 94.11 | 94.11 | 83.33 | 82.35 | 94.11 | 82.35 | 88.88 | 94.44 | 100 | ||
| Fold 6 | 94.11 | 82.35 | 94.44 | 100 | 100 | 100 | 87.5 | 94.11 | 88.88 | 88.88 | ||
| Fold 7 | 83.33 | 94.44 | 100 | 100 | 83.33 | 87.5 | 100 | 88.23 | 100 | 100 | ||
| Fold 8 | 87.5 | 94.44 | 83.33 | 82.35 | 88.23 | 93.75 | 94.44 | 88.23 | 93.75 | 83.33 | ||
| Fold 9 | 94.44 | 100 | 94.44 | 88.88 | 100 | 88.23 | 100 | 82.35 | 88.88 | 100 | ||
| Fold 10 | 94.11 | 94.11 | 88.23 | 88.23 | 94.11 | 100 | 100 | 100 | 100 | 100 | ||
| Fold-wise accuracy | 91.32 | 92.34 | 92.51 | 90.67 | 92.96 | 92.40 | 91.11 | 91.24 | 90.67 | 92.50 | ||
Classification performance of AD from HC over ADNI data.
| Methods | Accuracy | Sensitivity | Specificity |
|---|---|---|---|
| Proposed | 92.65 ± 1.18 | 93.11 ± 1.29 | 92.19 ± 1.56 |
| DTCWT + PCA + TSVM | 91.77 ± 0.85 | 92.48 ± 0.89 | 91.13 ± 1.31 |
| DTCWT + PCA + LDA + Kernel SVM | 90.181 ± 0.97 | 90.276 ± 1.60 | 90.101 ± 1.23 |
| DTCWT + PCA + Kernel SVM | 82.74 ± 1.24 | 84.43 ± 1.51 | 81.18 ± 1.85 |
| DWT + PCA + LDA + TSVM | 86.75 ± 1.69 | 89.32 ± 1.43 | 84.23 ± 2.21 |
| DWT + PCA + TSVM | 85.88 ± 1.16 | 88.93 ± 1.61 | 88.93 ± 2.02 |
| DTCWT + PCA + LDA + ANN | 86.97 ± 1.30 | 86.25 ± 1.78 | 87.72 ± 3.51 |
| DTCWT + PCA + LDA + KNN | 83.89 ± 0.75 | 81.41 ± 1.33 | 86.34 ± 1.08 |
| DTCWT + PCA + LDA + AdaBoost (tree) | 84.48 | 83.72 | 85.26 |
| DWT + PCA + ANN [ | 80.05 ± 0.72 | 81.538 ± 1.41 | 78.974 ± 1.09 |
| DWT + PCA + KNN [ | 79.964 ± 1.19 | 78.771 ± 2.37 | 81.08 ± 1.67 |
| [ | 85 | 82 | 88 |
Run- and fold-wise classification performance of the proposed approach over OASIS dataset.
| Folds | Runs | Run 1 | Run 2 | Run 3 | Run 4 | Run 5 | Run 6 | Run 7 | Run 8 | Run 9 | Run 10 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Fold 1 | 94.44 | 94.44 | 100 | 88.23 | 100 | 100 | 100 | 94.11 | 100 | 100 |
| |
| Fold 2 | 94.11 | 100 | 88.23 | 88.88 | 88.88 | 100 | 94.11 | 100 | 88.88 | 93.75 | ||
| Fold 3 | 94.44 | 94.11 | 100 | 94.11 | 100 | 94.44 | 100 | 94.11 | 100 | 100 | ||
| Fold 4 | 100 | 100 | 100 | 94.44 | 100 | 94.44 | 100 | 100 | 100 | 100 | ||
| Fold 5 | 100 | 88.88 | 100 | 100 | 94.44 | 100 | 94.11 | 100 | 94.11 | 94.44 | ||
| Fold-wise accuracy | 96.60 | 95.49 | 97.64 | 93.13 | 96.66 | 97.77 | 97.64 | 97.64 | 96.60 | 97.63 | ||
Run- and fold-wise classification performance of the DTCWT + PCA + TSVM method over OASIS dataset.
| Folds | Runs | Run 1 | Run 2 | Run 3 | Run 4 | Run 5 | Run 6 | Run 7 | Run 8 | Run 9 | Run 10 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Fold 1 | 100 | 94.11 | 94.44 | 100 | 94.44 | 94.44 | 94.11 | 94.44 | 88.8 | 94.44 |
| |
| Fold 2 | 100 | 100 | 88.23 | 94.44 | 94.44 | 100 | 94.11 | 94.44 | 100 | 94.44 | ||
| Fold 3 | 94.44 | 83.33 | 94.44 | 94.11 | 100 | 94.44 | 94.44 | 94.11 | 94.44 | 100 | ||
| Fold 4 | 94.44 | 100 | 94.44 | 94.11 | 94.44 | 88.88 | 100 | 100 | 100 | 88.88 | ||
| Fold 5 | 94.11 | 100 | 94.11 | 94.44 | 100 | 87.5 | 100 | 94.44 | 100 | 100 | ||
| Fold-wise accuracy | 96.60 | 95.49 | 93.13 | 95.42 | 96.66 | 93.05 | 96.53 | 95.49 | 96.66 | 95.55 | ||
Algorithm performance comparison over OASIS MRI data.
| Algorithm | Accuracy | Sensitivity | Specificity | Precision |
|---|---|---|---|---|
| Proposed |
|
|
|
|
| DTCWT + PCA + TSVM | 95.46 ± 1.35 | 97.55 ± 1.26 | 93.36 ± 2.39 | 94.15 ± 2.01 |
| DWT + PCA + LDA + TSVM | 87.23 ± 1.65 | 89.61 ± 2.25 | 84.85 ± 1.66 | 86.66 ± 1.99 |
| DWT + PCA + TSVM | 86.19 ± 1.50 | 88.83 ± 1.98 | 83.5 ± 1.87 | 85.66 ± 1.84 |
| DTCWT + PCA + LDA + ANN | 88.59 + 2.08 | 88.75 + 2.75 | 89.55 + 3.96 | NA |
| DTCWT + PCA + LDA + KNN | 83.69 + 1.57 | 85.7 + 1.94 | 81.8 + 1.45 | NA |
| DTCWT + PCA + LDA + AdaBoost (tree) | 87.45 | 88.59 | 86.26 | NA |
| BRC + IG + SVM [ | 90.00 (77.41, 96.26) | 96.88 (82.01, 99.84) | 77.78 (51.92, 92.63) | NA |
| BRC + IG + Bayes [ | 92.00 (79.89, 97.41) | 93.75 (77.78, 98.27) | 88.89 (63.93, 98.05) | NA |
| BRC + IG + VFI [ | 78.00 (63.67, 88.01) | 65.63 (46.78, 80.83) | 100.00 (78.12, 100) | NA |
| MGM + PEC + SVM [ | 92.07 ± 1.12 | 86.67 ± 4.71 | N/A | 95.83 ± 5.89 |
| GEODAN + BD + SVM [ | 92.09 ± 2.60 | 80.00 ± 4.00 | NA | 88.09 ± 5.33 |
| TJM + WTT + SVM [ | 92.83 ± 0.91 | 86.33 ± 3.73 | N/A | 85.62 ± 0.85 |
| VBM + RF [ | 89.0 ± 0.7 | 87.9 ± 1.2 | 90.0 ± 1.1 | NA |
| DF + PCA + SVM [ | 88.27 ± 1.9 | 84.93 ± 1.21 | 89.21 ± 1.6 | 69.30 ± 1.91 |
| EB + WTT + SVM + RBF [ | 86.71 ± 1.93 | 85.71 ± 1.91 | 86.99 ± 2.30 | 66.12 ± 4.16 |
| EB + WTT + SVM + Pol [ | 92.36 ± 0.94 | 83.48 ± 3.27 | 94.90 ± 1.09 | 82.28 ± 2.78 |
| Curvelet + PCA + KNN [ | 89.47 | 94.12 | 84.09 | NA |
| US + SVDPCA + SVM-DT [ | 90 | 94 | 71 | NA |