Literature DB >> 33665002

Comparison of machine learning approaches for enhancing Alzheimer's disease classification.

Qi Li1, Mary Qu Yang1.   

Abstract

Alzheimer's disease (AD) is a progressive neurodegenerative disorder, accounting for nearly 60% of all dementia cases. The occurrence of the disease has been increasing rapidly in recent years. Presently about 46.8 million individuals suffer from AD worldwide. The current absence of effective treatment to reverse or stop AD progression highlights the importance of disease prevention and early diagnosis. Brain structural Magnetic Resonance Imaging (MRI) has been widely used for AD detection as it can display morphometric differences and cerebral structural changes. In this study, we built three machine learning-based MRI data classifiers to predict AD and infer the brain regions that contribute to disease development and progression. We then systematically compared the three distinct classifiers, which were constructed based on Support Vector Machine (SVM), 3D Very Deep Convolutional Network (VGGNet) and 3D Deep Residual Network (ResNet), respectively. To improve the performance of the deep learning classifiers, we applied a transfer learning strategy. The weights of a pre-trained model were transferred and adopted as the initial weights of our models. Transferring the learned features significantly reduced training time and increased network efficiency. The classification accuracy for AD subjects from elderly control subjects was 90%, 95%, and 95% for the SVM, VGGNet and ResNet classifiers, respectively. Gradient-weighted Class Activation Mapping (Grad-CAM) was employed to show discriminative regions that contributed most to the AD classification by utilizing the learned spatial information of the 3D-VGGNet and 3D-ResNet models. The resulted maps consistently highlighted several disease-associated brain regions, particularly the cerebellum which is a relatively neglected brain region in the present AD study. Overall, our comparisons suggested that the ResNet model provided the best classification performance as well as more accurate localization of disease-associated regions in the brain compared to the other two approaches. ©2021 Li and Yang.

Entities:  

Keywords:  Alzheimer’s disease; Deep residual network; Gradient-weighted class activation mapping; MRI; Very deep convolutional network

Year:  2021        PMID: 33665002      PMCID: PMC7916537          DOI: 10.7717/peerj.10549

Source DB:  PubMed          Journal:  PeerJ        ISSN: 2167-8359            Impact factor:   2.984


  27 in total

1.  Focal decline of cortical thickness in Alzheimer's disease identified by computational neuroanatomy.

Authors:  Jason P Lerch; Jens C Pruessner; Alex Zijdenbos; Harald Hampel; Stefan J Teipel; Alan C Evans
Journal:  Cereb Cortex       Date:  2004-11-10       Impact factor: 5.357

2.  The cortical signature of prodromal AD: regional thinning predicts mild AD dementia.

Authors:  Akram Bakkour; John C Morris; Bradford C Dickerson
Journal:  Neurology       Date:  2008-12-24       Impact factor: 9.910

Review 3.  The cerebellum in Alzheimer's disease: evaluating its role in cognitive decline.

Authors:  Heidi I L Jacobs; David A Hopkins; Helen C Mayrhofer; Emiliano Bruner; Fred W van Leeuwen; Wijnand Raaijmakers; Jeremy D Schmahmann
Journal:  Brain       Date:  2018-01-01       Impact factor: 13.501

4.  Singularity: Scientific containers for mobility of compute.

Authors:  Gregory M Kurtzer; Vanessa Sochat; Michael W Bauer
Journal:  PLoS One       Date:  2017-05-11       Impact factor: 3.240

5.  Prediction and classification of Alzheimer disease based on quantification of MRI deformation.

Authors:  Xiaojing Long; Lifang Chen; Chunxiang Jiang; Lijuan Zhang
Journal:  PLoS One       Date:  2017-03-06       Impact factor: 3.240

Review 6.  White matter changes in Alzheimer's disease: a focus on myelin and oligodendrocytes.

Authors:  Sara E Nasrabady; Batool Rizvi; James E Goldman; Adam M Brickman
Journal:  Acta Neuropathol Commun       Date:  2018-03-02       Impact factor: 7.801

7.  Genetic variants associated with Alzheimer's disease confer different cerebral cortex cell-type population structure.

Authors:  Zeran Li; Jorge L Del-Aguila; Umber Dube; John Budde; Rita Martinez; Kathleen Black; Qingli Xiao; Nigel J Cairns; Joseph D Dougherty; Jin-Moo Lee; John C Morris; Randall J Bateman; Celeste M Karch; Carlos Cruchaga; Oscar Harari
Journal:  Genome Med       Date:  2018-06-08       Impact factor: 11.117

8.  Automated classification of Alzheimer's disease and mild cognitive impairment using a single MRI and deep neural networks.

Authors:  Silvia Basaia; Federica Agosta; Luca Wagner; Elisa Canu; Giuseppe Magnani; Roberto Santangelo; Massimo Filippi
Journal:  Neuroimage Clin       Date:  2018-12-18       Impact factor: 4.881

9.  White Matter Changes in Patients with Alzheimer's Disease and Associated Factors.

Authors:  Yi-Hui Kao; Mei-Chuan Chou; Chun-Hung Chen; Yuan-Han Yang
Journal:  J Clin Med       Date:  2019-02-01       Impact factor: 4.241

10.  Frontal and temporal lobe contributions to emotional enhancement of memory in behavioral-variant frontotemporal dementia and Alzheimer's disease.

Authors:  Fiona Kumfor; Muireann Irish; John R Hodges; Olivier Piguet
Journal:  Front Behav Neurosci       Date:  2014-06-24       Impact factor: 3.558

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