Literature DB >> 29065160

Correction: Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.

Amidou N'Diaye, Jemanesh K Haile, Aron T Cory, Fran R Clarke, John M Clarke, Ron E Knox, Curtis J Pozniak.   

Abstract

[This corrects the article DOI: 10.1371/journal.pone.0170941.].

Entities:  

Year:  2017        PMID: 29065160      PMCID: PMC5655398          DOI: 10.1371/journal.pone.0187178

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


There is an error in Table 3. The effect of marker Tdurum_contig51688_681 for pigment loss should be 2.9 instead of 3.7. Please see the corrected Table 3 here.
Table 3

Individual SNP and haplotype loci significantly associated with colour traits.

Haplotype-based analysisSingle SNP-based analysisComparison
TraitHaplotypePositionnbM1P-valueR2(%)EffectMarkerPositionP-valueR2(%)EffectIVE2(%)IAE3(%)
Pasta a*hap_2A_122A (74.6–78)43.69E-0415.11.6
hap_3B_323B (201.5–205.5)31.04E-0313.41.0
hap_4B_64B (28.5–30.8)98.65E-0435.71.6Tdurum_contig51688_6814B (28.8)1.27E-0719.01.687.90.0
hap_4B_84B (37.4–41.7)91.04E-0327.61.7
Pasta b*hap_2A_52A (22.8–24.7)48.08E-0416.43.3Tdurum_contig54634_8152A (22.8)1.37E-049.53.272.63.1
hap_4B_64B (28.5–30.8)91.62E-0440.25.6Tdurum_contig51688_6814B (28.8)9.66E-1026.25.353.45.7
hap_4B_74B (32.7–35.2)71.51E-0325.64.9
hap_4B_124B (58.7–60.4)66.88E-0414.14.5Tdurum_contig37811_1344B (60)4.48E-0510.93.429.432.4
hap_5B_255B (129.7–131.2)46.80E-0414.13.1
hap_7B_367B (202.9–206.3)22.48E-039.32.3
Pigment losshap_2A_52A (22.8–24.7)44.65E-0417.63.5Tdurum_contig54634_8152A (22.8)2.34E-0511.92.447.979.2
hap_3B_333B (208–209.6)35.42E-0414.65.4
hap_4B_64B (28.5–30.8)92.03E-0333.63.7Tdurum_contig51688_6814B (28.8)1.17E-0926.22.928.227.0
hap_4B_74B (32.7–35.2)74.01E-0428.94.3
hap_4B_124B (58.7–60.4)69.15E-0517.53.3Tdurum_contig37811_1344B (60)1.02E-0513.02.634.626.9
hap_5B_255B (129.7–131.2)41.06E-0313.52.1
Semolina b*hap_2A_182A (117.6–121.3)98.63E-0324.52.5BobWhite_c41527_2012A (117.7)8.88E-0819.21.927.631.6
hap_7A_327A (180.2–181.8)105.65E-0334.63.3Tdurum_contig54832_1397A (181.4)5.53E-0819.82.074.765.0
hap_7B_367B (202.9–206.3)23.92E-038.51.3
Semolina pigmenthap_2A_182A (117.6–121.3)94.17E-0327.51.9BobWhite_c41527_2012A (117.7)2.00E-0821.41.428.535.7
hap_7A_327A (180.2–181.8)104.42E-0335.62.3Tdurum_contig54832_1397A (181.4)2.67E-0821.01.469.564.3
 hap_7B_367B (202.9–206.3)22.94E-038.91.0 

1nbM: Number of markers in the haplotype

2IVE: Increase in variance explained obtained from haplotype-based analysis compared to single SNP-based analysis

3IAE: Increase in allelic effect obtained from haplotype-based analysis compared to single SNP-based analysis

* Should be read as star (e.g., Pasta a* is ‘Pasta a star’

1nbM: Number of markers in the haplotype 2IVE: Increase in variance explained obtained from haplotype-based analysis compared to single SNP-based analysis 3IAE: Increase in allelic effect obtained from haplotype-based analysis compared to single SNP-based analysis * Should be read as star (e.g., Pasta a* is ‘Pasta a star’
  1 in total

1.  Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.

Authors:  Amidou N'Diaye; Jemanesh K Haile; Aron T Cory; Fran R Clarke; John M Clarke; Ron E Knox; Curtis J Pozniak
Journal:  PLoS One       Date:  2017-01-30       Impact factor: 3.240

  1 in total
  1 in total

1.  Molecular Markers Associated with Agro-Physiological Traits under Terminal Drought Conditions in Bread Wheat.

Authors:  Sajid Shokat; Deepmala Sehgal; Prashant Vikram; Fulai Liu; Sukhwinder Singh
Journal:  Int J Mol Sci       Date:  2020-04-30       Impact factor: 5.923

  1 in total

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