Literature DB >> 29063861

Analysis of time-correlated single photon counting data: a comparative evaluation of deterministic and probabilistic approaches.

Darren A Smith1, Grant McKenzie, Anita C Jones, Trevor A Smith.   

Abstract

We review various methods for analysing time-resolved fluorescence data acquired using the time-correlated single photon counting method in an attempt to evaluate their benefits and limitations. We have applied these methods to both experimental and simulated data. The relative merits of using deterministic approaches, such as the commonly used iterative reconvolution method, and probabilistic approaches, such as the smoothed exponential series method, the maximum entropy method and recently proposed basis pursuit denoising (compressed sensing) method, are outlined. In particular, we show the value of using multiple methods to arrive at the most appropriate choice of model. We show that the use of probabilistic analysis methods can indicate whether a discrete component or distribution analysis provides the better representation of the data.

Year:  2017        PMID: 29063861     DOI: 10.1088/2050-6120/aa8055

Source DB:  PubMed          Journal:  Methods Appl Fluoresc        ISSN: 2050-6120            Impact factor:   3.009


  8 in total

1.  Single-molecule conformational dynamics of a transcription factor reveals a continuum of binding modes controlling association and dissociation.

Authors:  Wei Chen; Wei Lu; Peter G Wolynes; Elizabeth A Komives
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

2.  7,7-bis(N, N-diethylethylenediamino)-8,8-dicyanoquinodimethane: Effect of Ethyl Moiety on the Photophysical Property besides Thermal Stability.

Authors:  Anwarhussaini Syed; Sabyashachi Mishra; Subbalakshmi Jayanty
Journal:  J Fluoresc       Date:  2021-10-02       Impact factor: 2.217

3.  High Resolution Fluorescence Lifetime Maps from Minimal Photon Counts.

Authors:  Mohamadreza Fazel; Sina Jazani; Lorenzo Scipioni; Alexander Vallmitjana; Enrico Gratton; Michelle A Digman; Steve Pressé
Journal:  ACS Photonics       Date:  2022-02-10       Impact factor: 7.077

Review 4.  Site-Directed Fluorescence Approaches for Dynamic Structural Biology of Membrane Peptides and Proteins.

Authors:  H Raghuraman; Satyaki Chatterjee; Anindita Das
Journal:  Front Mol Biosci       Date:  2019-09-25

5.  Site-directed fluorescence approaches to monitor the structural dynamics of proteins using intrinsic Trp and labeled with extrinsic fluorophores.

Authors:  Rupasree Brahma; Anindita Das; H Raghuraman
Journal:  STAR Protoc       Date:  2022-02-28

6.  Light-Harvesting Crystals Formed from BODIPY-Proline Biohybrid Conjugates: Antenna Effects and Excitonic Coupling.

Authors:  Sara M Waly; Joshua K G Karlsson; Paul G Waddell; Andrew C Benniston; Anthony Harriman
Journal:  J Phys Chem A       Date:  2022-03-01       Impact factor: 2.944

7.  Gating-related Structural Dynamics of the MgtE Magnesium Channel in Membrane-Mimetics Utilizing Site-Directed Tryptophan Fluorescence.

Authors:  Satyaki Chatterjee; Rupasree Brahma; H Raghuraman
Journal:  J Mol Biol       Date:  2020-10-22       Impact factor: 5.469

8.  Machine-learning model selection and parameter estimation from kinetic data of complex first-order reaction systems.

Authors:  László Zimányi; Áron Sipos; Ferenc Sarlós; Rita Nagypál; Géza I Groma
Journal:  PLoS One       Date:  2021-08-09       Impact factor: 3.240

  8 in total

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