| Literature DB >> 29062721 |
Ayodeji O Falade1,2, Onyedikachi A L Eyisi1,2, Leonard V Mabinya1,2, Uchechukwu U Nwodo1,2, Anthony I Okoh1,2.
Abstract
Interest in novel ligninolytic bacteria has remained topical due to, in part, the maneuverability of the bacterial genome. Conversely, the fungal genome lacks the dexterity for similar maneuverability thus, posing challenges in the fungal enzyme yield optimization process. Some impact of this situation includes the inability to commercialize the bio-catalytic process of lignin degradation by fungi. Consequently, this study assessed some fresh water bacteria isolates for ligninolytic and peroxidase properties through the utilization and degradation of model lignin compounds (guaiacol and veratryl alcohol) and the decolourization of selected ligninolytic indicator dyes; Azure B (AZB), Remazol Brilliant Blue R (RBBR) and Congo Red (CR). Bacterial strains with appreciable ligninolytic and peroxidase production potentials were identified through 16S rDNA sequence analysis and the nucleotide sequences deposited in the GenBank. About 5 isolates were positive for the degradation of both guaiacol (GA) and veratryl alcohol (VA) thus, accounting for about 17% of the test isolates. Similarly, AZB, RBBR and CR were respectively decolorized by 3, 2 and 5 bacterial strains thus, accounting for 10%, 7% and 17% of the test isolates. Two of the test bacterial strains were able to decolourize AZB, RBBR and CR respectively and these bacterial strains were identified as Raoultella ornithinolytica OKOH-1 and Ensifer adhaerens NWODO-2 with respective accession numbers as KX640917 and KX640918. Upon quantitation of the peroxidase activities; 5250 ± 0.00 U/L was recorded against Raoultella ornithinolytica OKOH-1 and 5833 ± 0.00 U/L against Ensifer adhaerens NWODO-2. The ligninolytic and dye decolourization properties of Raoultella ornithinolytica OKOH-1 and Ensifer adhaerens NWODO-2 marks for novelty particularly, as dyes with arene substituents were decolourized. Consequently, the potentials for the industrial applicability of these test bacterial strains abound as there is a dearth of information on organisms with such potentials.Entities:
Keywords: Azure B (PubChem CID: 68275); Congo red (PubChem CID: 11313); Dye decolourization; Guaiacol (PubChem CID: 460); Lignin degradation; Ligninolytic bacteria; Peroxidase; Proteobacteria; Pyrogallol (PubChem CID: 1057); RBBR, Remazol Brilliant Blue R (PubChem CID: 17409); Veratryl alcohol (PubChem CID: 7118)
Year: 2017 PMID: 29062721 PMCID: PMC5645169 DOI: 10.1016/j.btre.2017.10.001
Source DB: PubMed Journal: Biotechnol Rep (Amst) ISSN: 2215-017X
Isolated ligninolytic bacteria from fresh water milieu of Raymond Mhlaba Municipality, Eastern Cape, South Africa.
| S/N | Isolate code | Isolation source | Guaiacol degradation | Veratryl alcohol degradation |
|---|---|---|---|---|
| 1. | T1CS31 | Sediment | − | − |
| 2. | T1CS32 | Sediment | − | + |
| 3. | T1CS33 | Sediment | − | − |
| 4. | T1CS34 | Sediment | − | − |
| 5. | T1B2S31 | Sediment | − | + |
| 6. | T1B2S32 | Sediment | − | + |
| 7. | T1B2S33 | Sediment | − | + |
| 8. | T1B1S31 | Sediment | + | + |
| 9. | T1B1S32 | Sediment | − | − |
| 10. | T1B1S33 | Sediment | − | − |
| 11. | T1B1S34 | Sediment | + | + |
| 12. | T1B1S35 | Sediment | + | − |
| 13. | T1B1W31 | Water | + | + |
| 14. | T1B1W32 | Water | – | + |
| 15. | T1B2W31 | Water | – | – |
| 16. | T1B2W32 | Water | − | – |
| 17. | T1B2W33 | Water | − | − |
| 18. | T1CW31 | Water | − | − |
| 19. | T1CW32 | Water | − | − |
| 20. | T1CW33 | Water | + | − |
| 21. | T2BS21 | Sediment | − | + |
| 22. | T2BS31 | Sediment | − | + |
| 23. | T2BS32 | Sediment | − | − |
| 24. | T2BW31 | Water | + | + |
| 25. | T2BW32 | Water | − | + |
| 26. | T2BW33 | Water | − | − |
| 27. | T1CS3B | Sediment | − | − |
| 28. | T1CS3C | Sediment | − | − |
| 29. | T1CS3D | Sediment | + | + |
| 30. | T1CS3A | Sediment | − | − |
Fig. 1Phylogenetic tree showing the relationship between ligninolytic bacteria in this study and some previously reported ligninolytic bacteria in the NCBI database. The tips shown in green represent the ligninolytic bacteria isolated and sequenced in this study while the tips with other colours (red, black and blue) indicate the previously reported ligninolytic bacteria. Red tips indicate Bacilli; blue tips represent Actinobacteria while the green and black tips indicate Proteobacteria.
Degradation of guaiacol and veratryl alcohol by bacterial isolates.
| S/N | Isolate code | Diameter of halo zone for GA (mm) | Diameter of halo zone for VA (mm) |
|---|---|---|---|
| 1. | T1B1S31 | 26.00 ± 2.00a | 27.00 ± 1.00a |
| 2. | T1B1S34 | 27.00 ± 1.00a | 30.00 ± 0.00b |
| 3. | T1B1W31 | 25.00 ± 3.00a | 25.00 ± 1.00c |
| 4. | T1CS3D | 28.00 ± 0.00a | 31.00 ± 1.00d |
| 5. | T2BW31 | 32.00 ± 0.00b | 34.00 ± 0.00e |
GA:Guaiacol; VA:Veratryl Alcohol. Values represent mean ± standard deviation, number of replicate, n = 3. Values with the same superscript letter along the same column are not significantly different (P > 0.05).
Fig. 2Structures of dyes used in this study. Ortho positions are shown in red circles, Meta positions in black circles while Para position is indicated in blue circle.
Decolourization of dyes with different arene substituent.
| S/N | Isolate code | AZB | RBBR | CR |
|---|---|---|---|---|
| 1. | T1B1S31 | − | − | + |
| 2. | T1B1S34 | − | − | + |
| 3. | T1B1W31 | + | − | + |
| 4. | T1CS3D | + | + | + |
| 5. | T2BW31 | + | + | + |
+: positive; −: negative; AZB: Azure B; RBBR: Remazol Brilliant Blue R; CR: Congo Red.
Fig. 3Qualitative peroxidase activity of ligninolytic bacteria.
Evaluation of ligninolytic bacteria for peroxidase production.
| S/N | Isolate Code | Peroxidase Activity (U/L) |
|---|---|---|
| 1. | T1CS3D | 5250.00 ± 0.00 |
| 2. | T2BW31 | 5833.00 ± 0.00 |
Values represent mean ± standard deviation, number of replicate, n = 3.