Literature DB >> 29062146

An 18S rDNA Perspective on the Classification of Criconematoidea.

Thomas Powers1, Timothy Harris1, Rebecca Higgins1, Peter Mullin1, Kirsten Powers1.   

Abstract

In the nematode family Criconematidae, a taxonomy primarily based on cuticle characters has created classifications that are notoriously volatile. Molecular characters may lead to their stabilization. A phylogenetic tree of Criconematoidea was constructed using 166 new near full-length 18S rDNA sequences and 58 sequences from GenBank. Bayesian and maximum likelihood (ML) analyses produced trees with similar topologies. Major features include a strongly supported clade that includes Criconematidae and Hemicycliophoridae, excluding Paratylenchidae and Tylenchulidae. Another well-supported clade groups Criconema, Ogma, Crossonema, and Hemicriconemoides plus Xenocriconemella, combining nematodes with cuticular scales with those without scales at any life stage. Mesocriconema, Discocriconemella limitanea, Hemicaloosia, and Lobocriconema are recognized as monophyletic groups, but Criconemoides is paraphyletic. Both trees support an unexpected sister relationship between Bakernema and Hemicycliophora. The 18S rDNA dataset was insufficient for distinguishing genus boundaries between Criconema, Ogma, and Crossonema. The relationships depicted by the 18S rDNA phylogeny suggest that key morphological characters used in the classification of Criconematidae are not homologous.

Entities:  

Keywords:  18S rDNA; classification; criconematidae; phylogeny; systematics; taxonomy

Year:  2017        PMID: 29062146      PMCID: PMC5644916     

Source DB:  PubMed          Journal:  J Nematol        ISSN: 0022-300X            Impact factor:   1.402


  8 in total

1.  TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments.

Authors:  Iain Milne; Frank Wright; Glenn Rowe; David F Marshall; Dirk Husmeier; Gràinne McGuire
Journal:  Bioinformatics       Date:  2004-02-26       Impact factor: 6.937

2.  An improved molecular phylogeny of the Nematoda with special emphasis on marine taxa.

Authors:  Birgit H M Meldal; Nicola J Debenham; Paul De Ley; Irma Tandingan De Ley; Jacques R Vanfleteren; Andy R Vierstraete; Wim Bert; Gaetan Borgonie; Tom Moens; Paul A Tyler; Melanie C Austen; Mark L Blaxter; Alex D Rogers; P J D Lambshead
Journal:  Mol Phylogenet Evol       Date:  2006-09-23       Impact factor: 4.286

3.  Small subunit rDNA-based phylogeny of the Tylenchida sheds light on relationships among some high-impact plant-parasitic nematodes and the evolution of plant feeding.

Authors:  M Holterman; G Karssen; S van den Elsen; H van Megen; J Bakker; J Helder
Journal:  Phytopathology       Date:  2009-03       Impact factor: 4.025

4.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

Review 5.  Nematode effector proteins: an emerging paradigm of parasitism.

Authors:  Melissa G Mitchum; Richard S Hussey; Thomas J Baum; Xiaohong Wang; Axel A Elling; Martin Wubben; Eric L Davis
Journal:  New Phytol       Date:  2013-05-21       Impact factor: 10.151

6.  MOTUs, Morphology, and Biodiversity Estimation: A Case Study Using Nematodes of the Suborder Criconematina and a Conserved 18S DNA Barcode.

Authors:  Thomas Powers; Timothy Harris; Rebecca Higgins; Peter Mullin; Lisa Sutton; Kirsten Powers
Journal:  J Nematol       Date:  2011-03       Impact factor: 1.402

7.  Species discovery and diversity in Lobocriconema (Criconematidae: Nematoda) and related plant-parasitic nematodes from North American ecoregions.

Authors:  T O Powers; E C Bernard; T Harris; R Higgins; M Olson; S Olson; M Lodema; J Matczyszyn; P Mullin; L Sutton; K S Powers
Journal:  Zootaxa       Date:  2016-03-03       Impact factor: 1.091

8.  COI haplotype groups in Mesocriconema (Nematoda: Criconematidae) and their morphospecies associations.

Authors:  T O Powers; E C Bernard; T Harris; R Higgins; M Olson; M Lodema; P Mullin; L Sutton; K S Powers
Journal:  Zootaxa       Date:  2014-07-03       Impact factor: 1.091

  8 in total
  4 in total

1.  A Proposed New Species Complex within the Cosmopolitan Ring Nematode Criconema annuliferum (de Man, 1921) Micoletzky, 1925.

Authors:  Ilenia Clavero-Camacho; Juan Emilio Palomares-Rius; Carolina Cantalapiedra-Navarrete; Pablo Castillo; Gracia Liébanas; Antonio Archidona-Yuste
Journal:  Plants (Basel)       Date:  2022-07-29

2.  Remarks on phylogeny and molecular variations of criconematid species (Nematoda: Criconematidae) with case studies from Vietnam.

Authors:  Huu Tien Nguyen; Thi Duyen Nguyen; Thi Mai Linh Le; Quang Phap Trinh; Wim Bert
Journal:  Sci Rep       Date:  2022-09-01       Impact factor: 4.996

3.  Description and Distribution of Three Criconematid Nematodes from Hangzhou, Zhejiang Province, China.

Authors:  Maria Munawar; Thomas O Powers; Zhongling Tian; Timothy Harris; Rebecca Higgins; Jingwu Zheng
Journal:  J Nematol       Date:  2017-08-15       Impact factor: 1.402

4.  Twenty Years after De Ley and Blaxter-How Far Did We Progress in Understanding the Phylogeny of the Phylum Nematoda?

Authors:  Mohammed Ahmed; Oleksandr Holovachov
Journal:  Animals (Basel)       Date:  2021-12-07       Impact factor: 2.752

  4 in total

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