Literature DB >> 29058981

Entomological Collections in the Age of Big Data.

Andrew Edward Z Short1, Torsten Dikow2, Corrie S Moreau3.   

Abstract

With a million described species and more than half a billion preserved specimens, the large scale of insect collections is unequaled by those of any other group. Advances in genomics, collection digitization, and imaging have begun to more fully harness the power that such large data stores can provide. These new approaches and technologies have transformed how entomological collections are managed and utilized. While genomic research has fundamentally changed the way many specimens are collected and curated, advances in technology have shown promise for extracting sequence data from the vast holdings already in museums. Efforts to mainstream specimen digitization have taken root and have accelerated traditional taxonomic studies as well as distribution modeling and global change research. Emerging imaging technologies such as microcomputed tomography and confocal laser scanning microscopy are changing how morphology can be investigated. This review provides an overview of how the realization of big data has transformed our field and what may lie in store.

Keywords:  bioinformatics; biological specimens; digitization; genomics; natural history collections

Mesh:

Year:  2017        PMID: 29058981     DOI: 10.1146/annurev-ento-031616-035536

Source DB:  PubMed          Journal:  Annu Rev Entomol        ISSN: 0066-4170            Impact factor:   19.686


  12 in total

1.  Deep learning and computer vision will transform entomology.

Authors:  Toke T Høye; Johanna Ärje; Kim Bjerge; Oskar L P Hansen; Alexandros Iosifidis; Florian Leese; Hjalte M R Mann; Kristian Meissner; Claus Melvad; Jenni Raitoharju
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

Review 2.  Repositories for Taxonomic Data: Where We Are and What is Missing.

Authors:  Aurélien Miralles; Teddy Bruy; Katherine Wolcott; Mark D Scherz; Dominik Begerow; Bank Beszteri; Michael Bonkowski; Janine Felden; Birgit Gemeinholzer; Frank Glaw; Frank Oliver Glöckner; Oliver Hawlitschek; Ivaylo Kostadinov; Tim W Nattkemper; Christian Printzen; Jasmin Renz; Nataliya Rybalka; Marc Stadler; Tanja Weibulat; Thomas Wilke; Susanne S Renner; Miguel Vences
Journal:  Syst Biol       Date:  2020-11-01       Impact factor: 15.683

Review 3.  The promises and challenges of archiving insect behavior and natural history in a changing world.

Authors:  Michael J Sheehan; Sara E Miller
Journal:  Curr Opin Insect Sci       Date:  2021-04-20       Impact factor: 5.254

Review 4.  Museum specimens provide novel insights into changing plant-herbivore interactions.

Authors:  Emily K Meineke; T Jonathan Davies
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-19       Impact factor: 6.671

5.  VIRMISCO - The Virtual Microscope Slide Collection.

Authors:  Peter Decker; Axel Christian; Willi E R Xylander
Journal:  Zookeys       Date:  2018-03-07       Impact factor: 1.546

6.  MIReAD, a minimum information standard for reporting arthropod abundance data.

Authors:  Samuel S C Rund; Kyle Braak; Lauren Cator; Kyle Copas; Scott J Emrich; Gloria I Giraldo-Calderón; Michael A Johansson; Naveed Heydari; Donald Hobern; Sarah A Kelly; Daniel Lawson; Cynthia Lord; Robert M MacCallum; Dominique G Roche; Sadie J Ryan; Dmitry Schigel; Kurt Vandegrift; Matthew Watts; Jennifer M Zaspel; Samraat Pawar
Journal:  Sci Data       Date:  2019-04-25       Impact factor: 6.444

Review 7.  Trait-based ecology of terrestrial arthropods.

Authors:  Mark K L Wong; Benoit Guénard; Owen T Lewis
Journal:  Biol Rev Camb Philos Soc       Date:  2018-12-13

8.  Technological Advances to Address Current Issues in Entomology: 2020 Student Debates.

Authors:  Lina Bernaola; Molly Darlington; Kadie Britt; Patricia Prade; Morgan Roth; Adrian Pekarcik; Michelle Boone; Dylan Ricke; Anh Tran; Joanie King; Kelly Carruthers; Morgan Thompson; John J Ternest; Sarah E Anderson; Scott W Gula; Kayleigh C Hauri; Jacob R Pecenka; Sajjan Grover; Heena Puri; Surabhi Gupta Vakil
Journal:  J Insect Sci       Date:  2021-03-01       Impact factor: 1.857

9.  Museum genomics reveals the Xerces blue butterfly (Glaucopsyche xerces) was a distinct species driven to extinction.

Authors:  Felix Grewe; Marcus R Kronforst; Naomi E Pierce; Corrie S Moreau
Journal:  Biol Lett       Date:  2021-07-21       Impact factor: 3.703

10.  Assessment of North American arthropod collections: prospects and challenges for addressing biodiversity research.

Authors:  Neil S Cobb; Lawrence F Gall; Jennifer M Zaspel; Nicolas J Dowdy; Lindsie M McCabe; Akito Y Kawahara
Journal:  PeerJ       Date:  2019-11-25       Impact factor: 2.984

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