Literature DB >> 29057395

Parallelizing Affinity Propagation Using Graphics Processing Units for Spatial Cluster Analysis over Big Geospatial Data.

Xuan Shi1.   

Abstract

Introduced in 2007, affinity propagation (AP) is a relatively new machine learning algorithm for unsupervised classification that has seldom been applied in geospatial applications. One bottleneck is that AP could hardly handle large data, and a serial computer program would take a long time to complete an AP calculation. New multicore and manycore computer architectures, combined with application accelerators, show promise for achieving scalable geocomputation by exploiting task and data levels of parallelism. This chapter introduces our recent progress in parallelizing the AP algorithm on a graphics processing unit (GPU) for spatial cluster analysis, the potential of the proposed solution to process big geospatial data, and its broader impact for the GIScience community.

Entities:  

Keywords:  Affinity propagation; GPU; Parallel computing; Spatial clustering

Year:  2017        PMID: 29057395      PMCID: PMC5650075          DOI: 10.1007/978-3-319-22786-3_32

Source DB:  PubMed          Journal:  Proc Annu Conf GeoComput


  4 in total

1.  Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs.

Authors:  Brendan J Frey; Naveed Mohammad; Quaid D Morris; Wen Zhang; Mark D Robinson; Sanie Mnaimneh; Richard Chang; Qun Pan; Eric Sat; Janet Rossant; Benoit G Bruneau; Jane E Aubin; Benjamin J Blencowe; Timothy R Hughes
Journal:  Nat Genet       Date:  2005-08-28       Impact factor: 38.330

2.  Clustering by passing messages between data points.

Authors:  Brendan J Frey; Delbert Dueck
Journal:  Science       Date:  2007-01-11       Impact factor: 47.728

3.  APCluster: an R package for affinity propagation clustering.

Authors:  Ulrich Bodenhofer; Andreas Kothmeier; Sepp Hochreiter
Journal:  Bioinformatics       Date:  2011-07-06       Impact factor: 6.937

4.  Assessing Activity Pattern Similarity with Multidimensional Sequence Alignment based on a Multiobjective Optimization Evolutionary Algorithm.

Authors:  Mei-Po Kwan; Ningchuan Xiao; Guoxiang Ding
Journal:  Geogr Anal       Date:  2015-07
  4 in total

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