Literature DB >> 26190858

Assessing Activity Pattern Similarity with Multidimensional Sequence Alignment based on a Multiobjective Optimization Evolutionary Algorithm.

Mei-Po Kwan1, Ningchuan Xiao2, Guoxiang Ding3.   

Abstract

Due to the complexity and multidimensional characteristics of human activities, assessing the similarity of human activity patterns and classifying individuals with similar patterns remains highly challenging. This paper presents a new and unique methodology for evaluating the similarity among individual activity patterns. It conceptualizes multidimensional sequence alignment (MDSA) as a multiobjective optimization problem, and solves this problem with an evolutionary algorithm. The study utilizes sequence alignment to code multiple facets of human activities into multidimensional sequences, and to treat similarity assessment as a multiobjective optimization problem that aims to minimize the alignment cost for all dimensions simultaneously. A multiobjective optimization evolutionary algorithm (MOEA) is used to generate a diverse set of optimal or near-optimal alignment solutions. Evolutionary operators are specifically designed for this problem, and a local search method also is incorporated to improve the search ability of the algorithm. We demonstrate the effectiveness of our method by comparing it with a popular existing method called ClustalG using a set of 50 sequences. The results indicate that our method outperforms the existing method for most of our selected cases. The multiobjective evolutionary algorithm presented in this paper provides an effective approach for assessing activity pattern similarity, and a foundation for identifying distinctive groups of individuals with similar activity patterns.

Entities:  

Year:  2015        PMID: 26190858      PMCID: PMC4501399          DOI: 10.1111/gean.12040

Source DB:  PubMed          Journal:  Geogr Anal        ISSN: 0016-7363


  12 in total

Review 1.  Multiobjective evolutionary algorithms: analyzing the state-of-the-art.

Authors:  D A Van Veldhuizen; G B Lamont
Journal:  Evol Comput       Date:  2000       Impact factor: 3.277

Review 2.  Recent progress in multiple sequence alignment: a survey.

Authors:  Cédric Notredame
Journal:  Pharmacogenomics       Date:  2002-01       Impact factor: 2.533

3.  Exploring patterns of movement suspension in pedestrian mobility.

Authors:  Daniel Orellana; Monica Wachowicz
Journal:  Geogr Anal       Date:  2011

4.  A multiobjective evolutionary algorithm toolbox for computer-aided multiobjective optimization.

Authors:  K C Tan; T H Lee; D Khoo; E F Khor
Journal:  IEEE Trans Syst Man Cybern B Cybern       Date:  2001

5.  A genetic algorithm for multiple molecular sequence alignment.

Authors:  C Zhang; A K Wong
Journal:  Comput Appl Biosci       Date:  1997-12

6.  SAGA: sequence alignment by genetic algorithm.

Authors:  C Notredame; D G Higgins
Journal:  Nucleic Acids Res       Date:  1996-04-15       Impact factor: 16.971

7.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

8.  Medicine. Spatial turn in health research.

Authors:  Douglas B Richardson; Nora D Volkow; Mei-Po Kwan; Robert M Kaplan; Michael F Goodchild; Robert T Croyle
Journal:  Science       Date:  2013-03-22       Impact factor: 47.728

9.  Understanding individual human mobility patterns.

Authors:  Marta C González; César A Hidalgo; Albert-László Barabási
Journal:  Nature       Date:  2008-06-05       Impact factor: 49.962

10.  New approaches to human mobility: using mobile phones for demographic research.

Authors:  John R B Palmer; Thomas J Espenshade; Frederic Bartumeus; Chang Y Chung; Necati Ercan Ozgencil; Kathleen Li
Journal:  Demography       Date:  2013-06
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3.  Spatial and Temporal Characteristics of Pastoral Mobility in the Far North Region, Cameroon: Data Analysis and Modeling.

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  3 in total

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