Literature DB >> 30705133

Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide "Tiny" RNAs.

Patricia Baldrich1, Brian D Rutter2, Hana Zand Karimi2, Ram Podicheti2, Blake C Meyers1,3, Roger W Innes4.   

Abstract

Small RNAs (sRNAs) that are 21 to 24 nucleotides (nt) in length are found in most eukaryotic organisms and regulate numerous biological functions, including transposon silencing, development, reproduction, and stress responses, typically via control of the stability and/or translation of target mRNAs. Major classes of sRNAs in plants include microRNAs (miRNAs) and small interfering RNAs (siRNAs); sRNAs are known to travel as a silencing signal from cell to cell, root to shoot, and even between host and pathogen. In mammals, sRNAs are transported inside extracellular vesicles (EVs), which are mobile membrane-bound compartments that participate in intercellular communication. In addition to sRNAs, EVs carry proteins, lipids, metabolites, and potentially other types of nucleic acids. Here we report that Arabidopsis (Arabidopsis thaliana) EVs also contain diverse species of sRNA. We found that specific miRNAs and siRNAs are preferentially loaded into plant EVs. We also report a previously overlooked class of "tiny RNAs" (10 to 17 nt) that are highly enriched in EVs. This RNA category of unknown function has a broad and very diverse genome origin and might correspond to degradation products.
© 2019 American Society of Plant Biologists. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 30705133      PMCID: PMC6447009          DOI: 10.1105/tpc.18.00872

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  33 in total

1.  Embryonic stem cell-derived microvesicles reprogram hematopoietic progenitors: evidence for horizontal transfer of mRNA and protein delivery.

Authors:  J Ratajczak; K Miekus; M Kucia; J Zhang; R Reca; P Dvorak; M Z Ratajczak
Journal:  Leukemia       Date:  2006-05       Impact factor: 11.528

Review 2.  "And yet it moves": cell-to-cell and long-distance signaling by plant microRNAs.

Authors:  Esther Marín-González; Paula Suárez-López
Journal:  Plant Sci       Date:  2012-07-27       Impact factor: 4.729

Review 3.  Plasmodesmata in phloem: different gateways for different cargoes.

Authors:  Jung-Youn Lee; Margaret Frank
Journal:  Curr Opin Plant Biol       Date:  2018-05-08       Impact factor: 7.834

4.  Extracellular Vesicles Isolated from the Leaf Apoplast Carry Stress-Response Proteins.

Authors:  Brian D Rutter; Roger W Innes
Journal:  Plant Physiol       Date:  2016-11-08       Impact factor: 8.340

5.  Small dsRNAs induce transcriptional activation in human cells.

Authors:  Long-Cheng Li; Steven T Okino; Hong Zhao; Deepa Pookot; Robert F Place; Shinji Urakami; Hideki Enokida; Rajvir Dahiya
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-03       Impact factor: 11.205

6.  Switching from repression to activation: microRNAs can up-regulate translation.

Authors:  Shobha Vasudevan; Yingchun Tong; Joan A Steitz
Journal:  Science       Date:  2007-11-29       Impact factor: 47.728

7.  Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis.

Authors:  Todd Blevins; Ram Podicheti; Vibhor Mishra; Michelle Marasco; Jing Wang; Doug Rusch; Haixu Tang; Craig S Pikaard
Journal:  Elife       Date:  2015-10-02       Impact factor: 8.140

8.  RISC-interacting clearing 3'- 5' exoribonucleases (RICEs) degrade uridylated cleavage fragments to maintain functional RISC in Arabidopsis thaliana.

Authors:  Zhonghui Zhang; Fuqu Hu; Min Woo Sung; Chang Shu; Claudia Castillo-González; Hisashi Koiwa; Guiliang Tang; Martin Dickman; Pingwei Li; Xiuren Zhang
Journal:  Elife       Date:  2017-05-02       Impact factor: 8.140

9.  ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis.

Authors:  Yu Yu; Lijuan Ji; Brandon H Le; Jixian Zhai; Jiayi Chen; Elizabeth Luscher; Lei Gao; Chunyan Liu; Xiaofeng Cao; Beixin Mo; Jinbiao Ma; Blake C Meyers; Xuemei Chen
Journal:  PLoS Biol       Date:  2017-02-23       Impact factor: 8.029

10.  miRBase: annotating high confidence microRNAs using deep sequencing data.

Authors:  Ana Kozomara; Sam Griffiths-Jones
Journal:  Nucleic Acids Res       Date:  2013-11-25       Impact factor: 16.971

View more
  57 in total

1.  tyRNA Bubbles: Extracellular Vesicles Carry 10-15-Nucleotide Small RNAs and Specific Groups of MicroRNAs.

Authors:  Jennifer Mach
Journal:  Plant Cell       Date:  2019-02-27       Impact factor: 11.277

2.  Roger W. Innes.

Authors:  Sonali Roy
Journal:  Plant Cell       Date:  2019-02-20       Impact factor: 11.277

Review 3.  Functions of Extracellular Vesicles in Immunity and Virulence.

Authors:  Katarzyna Rybak; Silke Robatzek
Journal:  Plant Physiol       Date:  2019-01-31       Impact factor: 8.340

Review 4.  PhasiRNAs in Plants: Their Biogenesis, Genic Sources, and Roles in Stress Responses, Development, and Reproduction.

Authors:  Yuanlong Liu; Chong Teng; Rui Xia; Blake C Meyers
Journal:  Plant Cell       Date:  2020-08-18       Impact factor: 11.277

Review 5.  Extracellular tRNAs and tRNA-derived fragments.

Authors:  Juan Pablo Tosar; Alfonso Cayota
Journal:  RNA Biol       Date:  2020-02-19       Impact factor: 4.652

6.  Exchange of Small Regulatory RNAs between Plants and Their Pests.

Authors:  Collin Hudzik; Yingnan Hou; Wenbo Ma; Michael J Axtell
Journal:  Plant Physiol       Date:  2019-10-21       Impact factor: 8.340

7.  Turnip Mosaic Virus Components Are Released into the Extracellular Space by Vesicles in Infected Leaves.

Authors:  Nooshin Movahed; Daniel Garcia Cabanillas; Juan Wan; Hojatollah Vali; Jean-François Laliberté; Huanquan Zheng
Journal:  Plant Physiol       Date:  2019-04-24       Impact factor: 8.340

8.  Abundant expression of maternal siRNAs is a conserved feature of seed development.

Authors:  Jeffrey W Grover; Diane Burgess; Timmy Kendall; Abdul Baten; Suresh Pokhrel; Graham J King; Blake C Meyers; Michael Freeling; Rebecca A Mosher
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-15       Impact factor: 11.205

9.  MicroRNA-mediated responses to colchicine treatment in barley.

Authors:  Fang-Yao Sun; Lin Liu; Yi Yu; Xin-Ming Ruan; Cheng-Yu Wang; Qun-Wen Hu; De-Xiang Wu; Genlou Sun
Journal:  Planta       Date:  2020-01-06       Impact factor: 4.116

10.  Extensive profiling of the expressions of tRNAs and tRNA-derived fragments (tRFs) reveals the complexities of tRNA and tRF populations in plants.

Authors:  Xuan Ma; Chunyan Liu; Xiaocong Kong; Jing Liu; Siju Zhang; Shanshan Liang; Weijiang Luan; Xiaofeng Cao
Journal:  Sci China Life Sci       Date:  2021-02-08       Impact factor: 6.038

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.