Literature DB >> 29048222

Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions.

Diana M Gentry1, Elena S Amador2, Morgan L Cable3, Nosheen Chaudry4, Thomas Cullen4, Malene B Jacobsen5, Gayathri Murukesan6, Edward W Schwieterman2, Adam H Stevens7, Amanda Stockton8, George Tan8, Chang Yin9, David C Cullen4, Wolf Geppert9.   

Abstract

We conducted an analog sampling expedition under simulated mission constraints to areas dominated by basaltic tephra of the Eldfell and Fimmvörðuháls lava fields (Iceland). Sites were selected to be "homogeneous" at a coarse remote sensing resolution (10-100 m) in apparent color, morphology, moisture, and grain size, with best-effort realism in numbers of locations and replicates. Three different biomarker assays (counting of nucleic-acid-stained cells via fluorescent microscopy, a luciferin/luciferase assay for adenosine triphosphate, and quantitative polymerase chain reaction (qPCR) to detect DNA associated with bacteria, archaea, and fungi) were characterized at four nested spatial scales (1 m, 10 m, 100 m, and >1 km) by using five common metrics for sample site representativeness (sample mean variance, group F tests, pairwise t tests, and the distribution-free rank sum H and u tests). Correlations between all assays were characterized with Spearman's rank test. The bioluminescence assay showed the most variance across the sites, followed by qPCR for bacterial and archaeal DNA; these results could not be considered representative at the finest resolution tested (1 m). Cell concentration and fungal DNA also had significant local variation, but they were homogeneous over scales of >1 km. These results show that the selection of life detection assays and the number, distribution, and location of sampling sites in a low biomass environment with limited a priori characterization can yield both contrasting and complementary results, and that their interdependence must be given due consideration to maximize science return in future biomarker sampling expeditions. Key Words: Astrobiology-Biodiversity-Microbiology-Iceland-Planetary exploration-Mars mission simulation-Biomarker. Astrobiology 17, 1009-1021.

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Year:  2017        PMID: 29048222      PMCID: PMC5686451          DOI: 10.1089/ast.2016.1575

Source DB:  PubMed          Journal:  Astrobiology        ISSN: 1557-8070            Impact factor:   4.335


  22 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  Searching for life on Mars: selection of molecular targets for ESA's aurora ExoMars mission.

Authors:  John Parnell; David Cullen; Mark R Sims; Stephen Bowden; Charles S Cockell; Richard Court; Pascale Ehrenfreund; Francois Gaubert; William Grant; Victor Parro; Michel Rohmer; Mark Sephton; Helga Stan-Lotter; Andrew Steele; Jan Toporski; Jorge Vago
Journal:  Astrobiology       Date:  2007-08       Impact factor: 4.335

3.  Fluorescence microscopy as a tool for in situ life detection.

Authors:  J L Nadeau; N N Perreault; T D Niederberger; L G Whyte; H J Sun; R Leon
Journal:  Astrobiology       Date:  2008-08       Impact factor: 4.335

4.  Subglacial hydrothermal alteration minerals in Jökulhlaup deposits of Southern Iceland, with implications for detecting past or present habitable environments on Mars.

Authors:  Nicholas H Warner; Jack D Farmer
Journal:  Astrobiology       Date:  2010-06       Impact factor: 4.335

Review 5.  Use of fluorochromes for direct enumeration of total bacteria in environmental samples: past and present.

Authors:  R L Kepner; J R Pratt
Journal:  Microbiol Rev       Date:  1994-12

Review 6.  A review of bioluminescent ATP techniques in rapid microbiology.

Authors:  P E Stanley
Journal:  J Biolumin Chemilumin       Date:  1989-07

7.  NIH Image to ImageJ: 25 years of image analysis.

Authors:  Caroline A Schneider; Wayne S Rasband; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-07       Impact factor: 28.547

8.  Intrusion triggering of the 2010 Eyjafjallajökull explosive eruption.

Authors:  Freysteinn Sigmundsson; Sigrún Hreinsdóttir; Andrew Hooper; Thóra Arnadóttir; Rikke Pedersen; Matthew J Roberts; Níels Oskarsson; Amandine Auriac; Judicael Decriem; Páll Einarsson; Halldór Geirsson; Martin Hensch; Benedikt G Ofeigsson; Erik Sturkell; Hjörleifur Sveinbjörnsson; Kurt L Feigl
Journal:  Nature       Date:  2010-11-18       Impact factor: 49.962

9.  Persistence of biomarker ATP and ATP-generating capability in bacterial cells and spores contaminating spacecraft materials under earth conditions and in a simulated martian environment.

Authors:  Patricia Fajardo-Cavazos; Andrew C Schuerger; Wayne L Nicholson
Journal:  Appl Environ Microbiol       Date:  2008-06-20       Impact factor: 4.792

10.  Mineralogy, provenance, and diagenesis of a potassic basaltic sandstone on Mars: CheMin X-ray diffraction of the Windjana sample (Kimberley area, Gale Crater).

Authors:  Allan H Treiman; David L Bish; David T Vaniman; Steve J Chipera; David F Blake; Doug W Ming; Richard V Morris; Thomas F Bristow; Shaunna M Morrison; Michael B Baker; Elizabeth B Rampe; Robert T Downs; Justin Filiberto; Allen F Glazner; Ralf Gellert; Lucy M Thompson; Mariek E Schmidt; Laetitia Le Deit; Roger C Wiens; Amy C McAdam; Cherie N Achilles; Kenneth S Edgett; Jack D Farmer; Kim V Fendrich; John P Grotzinger; Sanjeev Gupta; John Michael Morookian; Megan E Newcombe; Melissa S Rice; John G Spray; Edward M Stolper; Dawn Y Sumner; Ashwin R Vasavada; Albert S Yen
Journal:  J Geophys Res Planets       Date:  2016-01-29       Impact factor: 3.755

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  4 in total

1.  Identifying molecules as biosignatures with assembly theory and mass spectrometry.

Authors:  Stuart M Marshall; Cole Mathis; Emma Carrick; Graham Keenan; Geoffrey J T Cooper; Heather Graham; Matthew Craven; Piotr S Gromski; Douglas G Moore; Sara I Walker; Leroy Cronin
Journal:  Nat Commun       Date:  2021-05-24       Impact factor: 14.919

2.  A Low-Diversity Microbiota Inhabits Extreme Terrestrial Basaltic Terrains and Their Fumaroles: Implications for the Exploration of Mars.

Authors:  Charles S Cockell; Jesse P Harrison; Adam H Stevens; Samuel J Payler; Scott S Hughes; Shannon E Kobs Nawotniak; Allyson L Brady; R C Elphic; Christopher W Haberle; Alexander Sehlke; Kara H Beaton; Andrew F J Abercromby; Petra Schwendner; Jennifer Wadsworth; Hanna Landenmark; Rosie Cane; Andrew W Dickinson; Natasha Nicholson; Liam Perera; Darlene S S Lim
Journal:  Astrobiology       Date:  2019-03       Impact factor: 4.335

3.  Strategic Planning Insights for Future Science-Driven Extravehicular Activity on Mars.

Authors:  Allyson L Brady; Shannon E Kobs Nawotniak; Scott S Hughes; Samuel J Payler; Adam H Stevens; Charles S Cockell; Richard C Elphic; Alexander Sehlke; Christopher W Haberle; Greg F Slater; Darlene S S Lim
Journal:  Astrobiology       Date:  2019-03       Impact factor: 4.335

4.  Laboratory experiment of ATP measurement using Mars soil simulant: as a method for extraterrestrial life detection.

Authors:  Keigo Enya; Satoshi Sasaki
Journal:  Anal Sci       Date:  2022-02-25       Impact factor: 1.967

  4 in total

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