Literature DB >> 29044247

Regulation of genome organization and gene expression by nuclear mechanotransduction.

Caroline Uhler1, G V Shivashankar2,3.   

Abstract

It is well established that cells sense chemical signals from their local microenvironment and transduce them to the nucleus to regulate gene expression programmes. Although a number of experiments have shown that mechanical cues can also modulate gene expression, the underlying mechanisms are far from clear. Nevertheless, we are now beginning to understand how mechanical cues are transduced to the nucleus and how they influence nuclear mechanics, genome organization and transcription. In particular, recent progress in super-resolution imaging, in genome-wide application of RNA sequencing, chromatin immunoprecipitation and chromosome conformation capture and in theoretical modelling of 3D genome organization enables the exploration of the relationship between cell mechanics, 3D chromatin configurations and transcription, thereby shedding new light on how mechanical forces regulate gene expression.

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Year:  2017        PMID: 29044247     DOI: 10.1038/nrm.2017.101

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  149 in total

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Review 2.  The LIM domain: from the cytoskeleton to the nucleus.

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Journal:  Nat Rev Mol Cell Biol       Date:  2004-11       Impact factor: 94.444

Review 3.  Tissue cells feel and respond to the stiffness of their substrate.

Authors:  Dennis E Discher; Paul Janmey; Yu-Li Wang
Journal:  Science       Date:  2005-11-18       Impact factor: 47.728

4.  Nuclear Positioning and Its Translational Dynamics Are Regulated by Cell Geometry.

Authors:  A V Radhakrishnan; Doorgesh S Jokhun; Saradha Venkatachalapathy; G V Shivashankar
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

Review 5.  Quantifying forces in cell biology.

Authors:  Pere Roca-Cusachs; Vito Conte; Xavier Trepat
Journal:  Nat Cell Biol       Date:  2017-06-19       Impact factor: 28.824

Review 6.  Mechanosensitive mechanisms in transcriptional regulation.

Authors:  Akiko Mammoto; Tadanori Mammoto; Donald E Ingber
Journal:  J Cell Sci       Date:  2012-07-13       Impact factor: 5.285

7.  Spatial dynamics of chromosome translocations in living cells.

Authors:  Vassilis Roukos; Ty C Voss; Christine K Schmidt; Seungtaek Lee; Darawalee Wangsa; Tom Misteli
Journal:  Science       Date:  2013-08-09       Impact factor: 47.728

8.  Matrix rigidity regulates a switch between TGF-β1-induced apoptosis and epithelial-mesenchymal transition.

Authors:  Jennifer L Leight; Michele A Wozniak; Sophia Chen; Michelle L Lynch; Christopher S Chen
Journal:  Mol Biol Cell       Date:  2012-01-11       Impact factor: 4.138

9.  Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci.

Authors:  Daan Noordermeer; Marion Leleu; Patrick Schorderet; Elisabeth Joye; Fabienne Chabaud; Denis Duboule
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

Review 10.  Dynamics of the actin cytoskeleton mediates receptor cross talk: An emerging concept in tuning receptor signaling.

Authors:  Pieta K Mattila; Facundo D Batista; Bebhinn Treanor
Journal:  J Cell Biol       Date:  2016-02-01       Impact factor: 10.539

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  87 in total

1.  Disrupted mechanobiology links the molecular and cellular phenotypes in familial dilated cardiomyopathy.

Authors:  Sarah R Clippinger; Paige E Cloonan; Lina Greenberg; Melanie Ernst; W Tom Stump; Michael J Greenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-19       Impact factor: 11.205

2.  Helical nanofiber yarn enabling highly stretchable engineered microtissue.

Authors:  Yiwei Li; Fengyun Guo; Yukun Hao; Satish Kumar Gupta; Jiliang Hu; Yaqiong Wang; Nü Wang; Yong Zhao; Ming Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-24       Impact factor: 11.205

Review 3.  Mechanogenetics for cellular engineering and cancer immunotherapy.

Authors:  Linshan Zhu; Yiqian Wu; Chi Woo Yoon; Yingxiao Wang
Journal:  Curr Opin Biotechnol       Date:  2020-07-24       Impact factor: 9.740

Review 4.  Blank spots on the map: some current questions on nuclear organization and genome architecture.

Authors:  Carmen Adriaens; Leonid A Serebryannyy; Marina Feric; Andria Schibler; Karen J Meaburn; Nard Kubben; Pawel Trzaskoma; Sigal Shachar; Sandra Vidak; Elizabeth H Finn; Varun Sood; Gianluca Pegoraro; Tom Misteli
Journal:  Histochem Cell Biol       Date:  2018-09-20       Impact factor: 4.304

Review 5.  Regulation of mechanotransduction: Emerging roles for septins.

Authors:  Maxine Lam; Fernando Calvo
Journal:  Cytoskeleton (Hoboken)       Date:  2018-10-10

6.  Microtubules control nuclear shape and gene expression during early stages of hematopoietic differentiation.

Authors:  Stefan Biedzinski; Gökçe Agsu; Benoit Vianay; Marc Delord; Laurent Blanchoin; Jerome Larghero; Lionel Faivre; Manuel Théry; Stéphane Brunet
Journal:  EMBO J       Date:  2020-10-22       Impact factor: 11.598

7.  Mechanical Force Induces Phosphorylation-Mediated Signaling that Underlies Tissue Response and Robustness in Xenopus Embryos.

Authors:  Yutaka Hashimoto; Noriyuki Kinoshita; Todd M Greco; Joel D Federspiel; Pierre M Jean Beltran; Naoto Ueno; Ileana M Cristea
Journal:  Cell Syst       Date:  2019-03-06       Impact factor: 10.304

8.  The promise of single-cell mechanophenotyping for clinical applications.

Authors:  Molly Kozminsky; Lydia L Sohn
Journal:  Biomicrofluidics       Date:  2020-06-09       Impact factor: 2.800

9.  Nuclear Mechanics within Intact Cells Is Regulated by Cytoskeletal Network and Internal Nanostructures.

Authors:  Jitao Zhang; Farid Alisafaei; Miloš Nikolić; Xuefei A Nou; Hanyoup Kim; Vivek B Shenoy; Giuliano Scarcelli
Journal:  Small       Date:  2020-04-03       Impact factor: 13.281

Review 10.  Functional nanoarrays for investigating stem cell fate and function.

Authors:  Jin-Ho Lee; Jeffrey Luo; Hye Kyu Choi; Sy-Tsong Dean Chueng; Ki-Bum Lee; Jeong-Woo Choi
Journal:  Nanoscale       Date:  2020-02-24       Impact factor: 7.790

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