Literature DB >> 29043790

Emissive Synthetic Cofactors: An Isomorphic, Isofunctional, and Responsive NAD+ Analogue.

Alexander R Rovira1, Andrea Fin1, Yitzhak Tor1.   

Abstract

The synthesis, photophysics, and biochemical utility of a fluorescent NAD+ analogue based on an isothiazolo[4,3-d]pyrimidine core (NtzAD+) are described. Enzymatic reactions, photophysically monitored in real time, show NtzAD+ and NtzADH to be substrates for yeast alcohol dehydrogenase and lactate dehydrogenase, respectively, with reaction rates comparable to that of the native cofactors. A drop in fluorescence is seen as NtzAD+ is converted to NtzADH, reflecting a complementary photophysical behavior to that of the native NAD+/NADH. NtzAD+ and NtzADH serve as substrates for NADase, which selectively cleaves the nicotinamide's glycosidic bond yielding tzADP-ribose. NtzAD+ also serves as a substrate for ribosyl transferases, including human adenosine ribosyl transferase 5 (ART5) and Cholera toxin subunit A (CTA), which hydrolyze the nicotinamide and transfer tzADP-ribose to an arginine analogue, respectively. These reactions can be monitored by fluorescence spectroscopy, in stark contrast to the corresponding processes with the nonemissive NAD+.

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Year:  2017        PMID: 29043790      PMCID: PMC5766281          DOI: 10.1021/jacs.7b05852

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  40 in total

1.  Conformation of NADH studied by fluorescence excitation transfer spectroscopy.

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3.  Chemoenzymatic synthesis and utilization of a SAM analog with an isomorphic nucleobase.

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4.  Protein glycation by ADP-ribose: studies of model conjugates.

Authors:  D Cervantes-Laurean; D E Minter; E L Jacobson; M K Jacobson
Journal:  Biochemistry       Date:  1993-02-16       Impact factor: 3.162

Review 5.  Etheno-substituted nucleotides and coenzymes: fluorescence and biological activity.

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Journal:  CRC Crit Rev Biochem       Date:  1984

6.  DNA cleavage by UVA irradiation of NADH with dioxygen via radical chain processes.

Authors:  Makiko Tanaka; Kei Ohkubo; Shunichi Fukuzumi
Journal:  J Phys Chem A       Date:  2006-09-28       Impact factor: 2.781

Review 7.  Slowing ageing by design: the rise of NAD+ and sirtuin-activating compounds.

Authors:  Michael S Bonkowski; David A Sinclair
Journal:  Nat Rev Mol Cell Biol       Date:  2016-08-24       Impact factor: 94.444

Review 8.  Toward a unified nomenclature for mammalian ADP-ribosyltransferases.

Authors:  Michael O Hottiger; Paul O Hassa; Bernhard Lüscher; Herwig Schüler; Friedrich Koch-Nolte
Journal:  Trends Biochem Sci       Date:  2010-01-26       Impact factor: 13.807

9.  Mitochondrial redox signalling at a glance.

Authors:  Yvonne Collins; Edward T Chouchani; Andrew M James; Katja E Menger; Helena M Cochemé; Michael P Murphy
Journal:  J Cell Sci       Date:  2012-02-15       Impact factor: 5.285

10.  Expanding a fluorescent RNA alphabet: synthesis, photophysics and utility of isothiazole-derived purine nucleoside surrogates.

Authors:  Alexander R Rovira; Andrea Fin; Yitzhak Tor
Journal:  Chem Sci       Date:  2017-01-30       Impact factor: 9.825

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  10 in total

1.  Emissive Synthetic Cofactors: Enzymatic Interconversions of tz A Analogues of ATP, NAD+ , NADH, NADP+ , and NADPH.

Authors:  François Hallé; Andrea Fin; Alexander R Rovira; Yitzhak Tor
Journal:  Angew Chem Int Ed Engl       Date:  2017-12-21       Impact factor: 15.336

2.  A New Variant of Emissive RNA Alphabets.

Authors:  Paul T Ludford; Shenghua Yang; Marcela S Bucardo; Yitzhak Tor
Journal:  Chemistry       Date:  2022-02-02       Impact factor: 5.236

3.  Enzymatic Syntheses and Applications of Fluorescent Cyclic Dinucleotides.

Authors:  Yao Li; Paul T Ludford; Andrea Fin; Alexander R Rovira; Yitzhak Tor
Journal:  Chemistry       Date:  2020-04-28       Impact factor: 5.236

4.  Fluorescent Probes for Monitoring Serine Ubiquitination.

Authors:  Kedar Puvar; Aya M Saleh; Ryan W Curtis; Yiyang Zhou; Prasanth R Nyalapatla; Jiaqi Fu; Alexander R Rovira; Yitzhak Tor; Zhao-Qing Luo; Arun K Ghosh; Mary J Wirth; Jean Chmielewski; Tamara L Kinzer-Ursem; Chittaranjan Das
Journal:  Biochemistry       Date:  2020-03-27       Impact factor: 3.162

5.  Cytidine deaminase can deaminate fused pyrimidine ribonucleosides.

Authors:  Paul T Ludford; Yao Li; Shenghua Yang; Yitzhak Tor
Journal:  Org Biomol Chem       Date:  2021-07-21       Impact factor: 3.890

6.  Creating enzymes and self-sufficient cells for biosynthesis of the non-natural cofactor nicotinamide cytosine dinucleotide.

Authors:  Xueying Wang; Yanbin Feng; Xiaojia Guo; Qian Wang; Siyang Ning; Qing Li; Junting Wang; Lei Wang; Zongbao K Zhao
Journal:  Nat Commun       Date:  2021-04-09       Impact factor: 14.919

7.  Exploration of the cofactor specificity of wild-type phosphite dehydrogenase and its mutant using molecular dynamics simulations.

Authors:  Kunlu Liu; Min Wang; Yubo Zhou; Hongxiang Wang; Yudong Liu; Lu Han; Weiwei Han
Journal:  RSC Adv       Date:  2021-04-19       Impact factor: 3.361

Review 8.  The role of NAD and NAD precursors on longevity and lifespan modulation in the budding yeast, Saccharomyces cerevisiae.

Authors:  Chuks Kenneth Odoh; Xiaojia Guo; James T Arnone; Xueying Wang; Zongbao K Zhao
Journal:  Biogerontology       Date:  2022-03-09       Impact factor: 4.284

Review 9.  Functionalised Cofactor Mimics for Interactome Discovery and Beyond.

Authors:  Isabel V L Wilkinson; Martin Pfanzelt; Stephan A Sieber
Journal:  Angew Chem Int Ed Engl       Date:  2022-05-31       Impact factor: 16.823

Review 10.  NAD Analogs in Aid of Chemical Biology and Medicinal Chemistry.

Authors:  Anais Depaix; Joanna Kowalska
Journal:  Molecules       Date:  2019-11-19       Impact factor: 4.411

  10 in total

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