Literature DB >> 29040672

Unsupervised Learning of Spatiotemporal Interictal Discharges in Focal Epilepsy.

Maxime O Baud1,2, Jonathan K Kleen2, Gopala K Anumanchipalli1, Liberty S Hamilton1, Yee-Leng Tan2,3, Robert Knowlton2, Edward F Chang1.   

Abstract

BACKGROUND: Interictal epileptiform discharges are an important biomarker for localization of focal epilepsy, especially in patients who undergo chronic intracranial monitoring. Manual detection of these pathophysiological events is cumbersome, but is still superior to current rule-based approaches in most automated algorithms.
OBJECTIVE: To develop an unsupervised machine-learning algorithm for the improved, automated detection and localization of interictal epileptiform discharges based on spatiotemporal pattern recognition.
METHODS: We decomposed 24 h of intracranial electroencephalography signals into basis functions and activation vectors using non-negative matrix factorization (NNMF). Thresholding the activation vector and the basis function of interest detected interictal epileptiform discharges in time and space (specific electrodes), respectively. We used convolutive NNMF, a refined algorithm, to add a temporal dimension to basis functions.
RESULTS: The receiver operating characteristics for NNMF-based detection are close to the gold standard of human visual-based detection and superior to currently available alternative automated approaches (93% sensitivity and 97% specificity). The algorithm successfully identified thousands of interictal epileptiform discharges across a full day of neurophysiological recording and accurately summarized their localization into a single map. Adding a temporal window allowed for visualization of the archetypal propagation network of these epileptiform discharges.
CONCLUSION: Unsupervised learning offers a powerful approach towards automated identification of recurrent pathological neurophysiological signals, which may have important implications for precise, quantitative, and individualized evaluation of focal epilepsy.

Entities:  

Mesh:

Year:  2018        PMID: 29040672      PMCID: PMC6454796          DOI: 10.1093/neuros/nyx480

Source DB:  PubMed          Journal:  Neurosurgery        ISSN: 0148-396X            Impact factor:   4.654


  24 in total

1.  Epilepsy.

Authors:  Vikram R Rao; Daniel H Lowenstein
Journal:  Curr Biol       Date:  2015-08-31       Impact factor: 10.834

2.  Comparison of line length feature before and after brain electrical stimulation in epileptic patients.

Authors:  R Esteller; J Echauz; T Tcheng
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

3.  Non-negative matrix factorization and sparse representation for sleep signal classification.

Authors:  Mehrnaz Shokrollahi; Sridhar Krishnan
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

4.  Automated quantification of spikes.

Authors:  Vamsidhar Chavakula; Iván Sánchez Fernández; Jurriaan M Peters; Gautam Popli; William Bosl; Sanjay Rakhade; Alexander Rotenberg; Tobias Loddenkemper
Journal:  Epilepsy Behav       Date:  2013-01-03       Impact factor: 2.937

5.  Gamma oscillations precede interictal epileptiform spikes in the seizure onset zone.

Authors:  Liankun Ren; Michal T Kucewicz; Jan Cimbalnik; Joseph Y Matsumoto; Benjamin H Brinkmann; Wei Hu; W Richard Marsh; Fredric B Meyer; S Matthew Stead; Gregory A Worrell
Journal:  Neurology       Date:  2015-01-14       Impact factor: 9.910

6.  High frequency oscillations in the intra-operative ECoG to guide epilepsy surgery ("The HFO Trial"): study protocol for a randomized controlled trial.

Authors:  Maryse A van 't Klooster; Frans S S Leijten; Geertjan Huiskamp; Hanneke E Ronner; Johannes C Baayen; Peter C van Rijen; Martinus J C Eijkemans; Kees P J Braun; Maeike Zijlmans
Journal:  Trials       Date:  2015-09-23       Impact factor: 2.279

7.  High inter-reviewer variability of spike detection on intracranial EEG addressed by an automated multi-channel algorithm.

Authors:  Daniel T Barkmeier; Aashit K Shah; Danny Flanagan; Marie D Atkinson; Rajeev Agarwal; Darren R Fuerst; Kourosh Jafari-Khouzani; Jeffrey A Loeb
Journal:  Clin Neurophysiol       Date:  2011-10-26       Impact factor: 3.708

8.  High-frequency oscillations mirror disease activity in patients with epilepsy.

Authors:  M Zijlmans; J Jacobs; R Zelmann; F Dubeau; J Gotman
Journal:  Neurology       Date:  2009-03-17       Impact factor: 9.910

9.  Electroencephalographic source imaging: a prospective study of 152 operated epileptic patients.

Authors:  Verena Brodbeck; Laurent Spinelli; Agustina M Lascano; Michael Wissmeier; Maria-Isabel Vargas; Serge Vulliemoz; Claudio Pollo; Karl Schaller; Christoph M Michel; Margitta Seeck
Journal:  Brain       Date:  2011-10       Impact factor: 13.501

10.  Two-year seizure reduction in adults with medically intractable partial onset epilepsy treated with responsive neurostimulation: final results of the RNS System Pivotal trial.

Authors:  Christianne N Heck; David King-Stephens; Andrew D Massey; Dileep R Nair; Barbara C Jobst; Gregory L Barkley; Vicenta Salanova; Andrew J Cole; Michael C Smith; Ryder P Gwinn; Christopher Skidmore; Paul C Van Ness; Gregory K Bergey; Yong D Park; Ian Miller; Eric Geller; Paul A Rutecki; Richard Zimmerman; David C Spencer; Alica Goldman; Jonathan C Edwards; James W Leiphart; Robert E Wharen; James Fessler; Nathan B Fountain; Gregory A Worrell; Robert E Gross; Stephan Eisenschenk; Robert B Duckrow; Lawrence J Hirsch; Carl Bazil; Cormac A O'Donovan; Felice T Sun; Tracy A Courtney; Cairn G Seale; Martha J Morrell
Journal:  Epilepsia       Date:  2014-02-22       Impact factor: 5.864

View more
  11 in total

1.  Accuracy of omni-planar and surface casting of epileptiform activity for intracranial seizure localization.

Authors:  Jonathan K Kleen; Benjamin A Speidel; Maxime O Baud; Vikram R Rao; Simon G Ammanuel; Liberty S Hamilton; Edward F Chang; Robert C Knowlton
Journal:  Epilepsia       Date:  2021-02-26       Impact factor: 5.864

2.  Development of a neural interface for high-definition, long-term recording in rodents and nonhuman primates.

Authors:  Chia-Han Chiang; Sang Min Won; Amy L Orsborn; Ki Jun Yu; Michael Trumpis; Brinnae Bent; Charles Wang; Yeguang Xue; Seunghwan Min; Virginia Woods; Chunxiu Yu; Bong Hoon Kim; Sung Bong Kim; Rizwan Huq; Jinghua Li; Kyung Jin Seo; Flavia Vitale; Andrew Richardson; Hui Fang; Yonggang Huang; Kenneth Shepard; Bijan Pesaran; John A Rogers; Jonathan Viventi
Journal:  Sci Transl Med       Date:  2020-04-08       Impact factor: 17.956

3.  Reproducibility of interictal spike propagation in children with refractory epilepsy.

Authors:  Samuel B Tomlinson; Jeremy N Wong; Erin C Conrad; Benjamin C Kennedy; Eric D Marsh
Journal:  Epilepsia       Date:  2019-04-21       Impact factor: 5.864

4.  Bidirectional propagation of low frequency oscillations over the human hippocampal surface.

Authors:  Jonathan K Kleen; Jason E Chung; Kristin K Sellers; Jenny Zhou; Michael Triplett; Kye Lee; Angela Tooker; Razi Haque; Edward F Chang
Journal:  Nat Commun       Date:  2021-05-12       Impact factor: 14.919

5.  Flexible, high-resolution thin-film electrodes for human and animal neural research.

Authors:  Chia-Han Chiang; Charles Wang; Katrina Barth; Shervin Rahimpour; Michael Trumpis; Suseendrakumar Duraivel; Iakov Rachinskiy; Agrita Dubey; Katie E Wingel; Megan Wong; Nicholas S Witham; Thomas Odell; Virginia Woods; Brinnae Bent; Werner Doyle; Daniel Friedman; Eckardt Bihler; Christopher F Reiche; Derek G Southwell; Michael M Haglund; Allan H Friedman; Shivanand P Lad; Sasha Devore; Orrin Devinsky; Florian Solzbacher; Bijan Pesaran; Gregory Cogan; Jonathan Viventi
Journal:  J Neural Eng       Date:  2021-06-17       Impact factor: 5.043

6.  Predicting epileptic seizures using nonnegative matrix factorization.

Authors:  Olivera Stojanović; Levin Kuhlmann; Gordon Pipa
Journal:  PLoS One       Date:  2020-02-05       Impact factor: 3.240

7.  Unsupervised Machine Learning-Based Analysis of Clinical Features, Bone Mineral Density Features and Medical Care Costs of Rotator Cuff Tears.

Authors:  Tong-Fu Wang; De-Sheng Chen; Jia-Wang Zhu; Bo Zhu; Zeng-Liang Wang; Jian-Gang Cao; Cai-Hong Feng; Jun-Wei Zhao
Journal:  Risk Manag Healthc Policy       Date:  2021-09-22

8.  Decoding Intracranial EEG With Machine Learning: A Systematic Review.

Authors:  Nykan Mirchi; Nebras M Warsi; Frederick Zhang; Simeon M Wong; Hrishikesh Suresh; Karim Mithani; Lauren Erdman; George M Ibrahim
Journal:  Front Hum Neurosci       Date:  2022-06-27       Impact factor: 3.473

9.  Interictal Epileptiform Discharges and the Quality of Human Intracranial Neurophysiology Data.

Authors:  Simon G Ammanuel; Jonathan K Kleen; Matthew K Leonard; Edward F Chang
Journal:  Front Hum Neurosci       Date:  2020-03-03       Impact factor: 3.169

Review 10.  Classifying epilepsy pragmatically: Past, present, and future.

Authors:  Nathan A Shlobin; Gagandeep Singh; Charles R Newton; Josemir W Sander
Journal:  J Neurol Sci       Date:  2021-05-29       Impact factor: 4.553

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.