Literature DB >> 29030241

Discovery of hidden allosteric sites as novel targets for allosteric drug design.

Shaoyong Lu1, Mingfei Ji2, Duan Ni1, Jian Zhang3.   

Abstract

Hidden allosteric sites, as a novel type of allosteric site, are invisible in ligand-unbound (apo) crystal structures, but can emerge in ligand-bound (holo) crystal structures when a specific ligand binds to, and stabilizes, a unique conformation favored by the ligand. However, the identification of these sites is a significant challenge. Several computational and experimental approaches have been developed to identify such sites in proteins. Here, we outline these approaches, with a focus on examples of the successful use of such techniques. The discovery of hidden allosteric sites offers a new avenue for facilitating drug design by greatly expanding the repertoire of available drug targets, contributing to the search for allosteric drugs for the treatment of human diseases.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29030241     DOI: 10.1016/j.drudis.2017.10.001

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  22 in total

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4.  In Silico Discovery of JMJD6 Inhibitors for Cancer Treatment.

Authors:  Ting Ran; Rongquan Xiao; Qixuan Huang; Haoliang Yuan; Tao Lu; Wen Liu
Journal:  ACS Med Chem Lett       Date:  2019-11-19       Impact factor: 4.345

Review 5.  Recent progress on cheminformatics approaches to epigenetic drug discovery.

Authors:  Zoe Sessions; Norberto Sánchez-Cruz; Fernando D Prieto-Martínez; Vinicius M Alves; Hudson P Santos; Eugene Muratov; Alexander Tropsha; José L Medina-Franco
Journal:  Drug Discov Today       Date:  2020-09-30       Impact factor: 7.851

6.  Insights into the Allosteric Effect of SENP1 Q597A Mutation on the Hydrolytic Reaction of SUMO1 via an Integrated Computational Study.

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Journal:  Molecules       Date:  2022-06-28       Impact factor: 4.927

7.  Computational Identification of Druggable Bioactive Compounds from Catharanthus roseus and Avicennia marina against Colorectal Cancer by Targeting Thymidylate Synthase.

Authors:  Md Rashedul Islam; Md Abdul Awal; Ahmed Khames; Mohammad A S Abourehab; Abdus Samad; Walid M I Hassan; Rahat Alam; Osman I Osman; Suza Mohammad Nur; Mohammad Habibur Rahman Molla; Abdulrasheed O Abdulrahman; Sultana Rajia; Foysal Ahammad; Md Nazmul Hasan; Ishtiaq Qadri; Bonglee Kim
Journal:  Molecules       Date:  2022-03-24       Impact factor: 4.411

Review 8.  Cryptic binding sites on proteins: definition, detection, and druggability.

Authors:  Sandor Vajda; Dmitri Beglov; Amanda E Wakefield; Megan Egbert; Adrian Whitty
Journal:  Curr Opin Chem Biol       Date:  2018-05-23       Impact factor: 8.822

9.  Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response.

Authors:  Wei-Ven Tee; Enrico Guarnera; Igor N Berezovsky
Journal:  PLoS Comput Biol       Date:  2018-06-18       Impact factor: 4.475

10.  Discovery of cryptic allosteric sites using reversed allosteric communication by a combined computational and experimental strategy.

Authors:  Duan Ni; Jiacheng Wei; Xinheng He; Ashfaq Ur Rehman; Xinyi Li; Yuran Qiu; Jun Pu; Shaoyong Lu; Jian Zhang
Journal:  Chem Sci       Date:  2020-11-02       Impact factor: 9.825

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