Literature DB >> 29027112

Field Synopsis and Re-analysis of Systematic Meta-analyses of Genetic Association Studies in Multiple Sclerosis: a Bayesian Approach.

Jae Hyon Park1, Joo Hi Kim2, Kye Eun Jo3, Se Whan Na2, Michael Eisenhut4, Andreas Kronbichler5, Keum Hwa Lee6, Jae Il Shin7.   

Abstract

To provide an up-to-date summary of multiple sclerosis-susceptible gene variants and assess the noteworthiness in hopes of finding true associations, we investigated the results of 44 meta-analyses on gene variants and multiple sclerosis published through December 2016. Out of 70 statistically significant genotype associations, roughly a fifth (21%) of the comparisons showed noteworthy false-positive rate probability (FPRP) at a statistical power to detect an OR of 1.5 and at a prior probability of 10-6 assumed for a random single nucleotide polymorphism. These associations (IRF8/rs17445836, STAT3/rs744166, HLA/rs4959093, HLA/rs2647046, HLA/rs7382297, HLA/rs17421624, HLA/rs2517646, HLA/rs9261491, HLA/rs2857439, HLA/rs16896944, HLA/rs3132671, HLA/rs2857435, HLA/rs9261471, HLA/rs2523393, HLA-DRB1/rs3135388, RGS1/rs2760524, PTGER4/rs9292777) also showed a noteworthy Bayesian false discovery probability (BFDP) and one additional association (CD24 rs8734/rs52812045) was also noteworthy via BFDP computation. Herein, we have identified several noteworthy biomarkers of multiple sclerosis susceptibility. We hope these data are used to study multiple sclerosis genetics and inform future screening programs.

Entities:  

Keywords:  BFDP; FPRP; Gene variant; Meta-analysis; Multiple sclerosis

Mesh:

Year:  2017        PMID: 29027112     DOI: 10.1007/s12035-017-0773-2

Source DB:  PubMed          Journal:  Mol Neurobiol        ISSN: 0893-7648            Impact factor:   5.590


  52 in total

1.  A Bayesian measure of the probability of false discovery in genetic epidemiology studies.

Authors:  Jon Wakefield
Journal:  Am J Hum Genet       Date:  2007-07-03       Impact factor: 11.025

Review 2.  Beyond odds ratios--communicating disease risk based on genetic profiles.

Authors:  Peter Kraft; Sholom Wacholder; Marilyn C Cornelis; Frank B Hu; Richard B Hayes; Gilles Thomas; Robert Hoover; David J Hunter; Stephen Chanock
Journal:  Nat Rev Genet       Date:  2009-04       Impact factor: 53.242

3.  The rapid isolation of clonable antigen-specific T lymphocyte lines capable of mediating autoimmune encephalomyelitis.

Authors:  A Ben-Nun; H Wekerle; I R Cohen
Journal:  Eur J Immunol       Date:  1981-03       Impact factor: 5.532

4.  Rgs1 and Gnai2 regulate the entrance of B lymphocytes into lymph nodes and B cell motility within lymph node follicles.

Authors:  Sang-Bae Han; Chantal Moratz; Ning-Na Huang; Brian Kelsall; Hyeseon Cho; Chong-Shan Shi; Owen Schwartz; John H Kehrl
Journal:  Immunity       Date:  2005-03       Impact factor: 31.745

5.  Immunohistochemical analysis of the cellular infiltrate in multiple sclerosis lesions.

Authors:  S L Hauser; A K Bhan; F Gilles; M Kemp; C Kerr; H L Weiner
Journal:  Ann Neurol       Date:  1986-06       Impact factor: 10.422

6.  IRF8 regulates B-cell lineage specification, commitment, and differentiation.

Authors:  Hongsheng Wang; Chang Hoon Lee; Chenfeng Qi; Prafullakumar Tailor; Jianxun Feng; Sadia Abbasi; Toru Atsumi; Herbert C Morse
Journal:  Blood       Date:  2008-09-17       Impact factor: 22.113

7.  Tobacco smoking, but not Swedish snuff use, increases the risk of multiple sclerosis.

Authors:  Anna K Hedström; Maria Bäärnhielm; Tomas Olsson; Lars Alfredsson
Journal:  Neurology       Date:  2009-09-01       Impact factor: 9.910

8.  Adoptive transfer of myelin basic protein-sensitized T cells produces chronic relapsing demyelinating disease in mice.

Authors:  F Mokhtarian; D E McFarlin; C S Raine
Journal:  Nature       Date:  1984 May 24-30       Impact factor: 49.962

9.  Multiple sclerosis: brain-infiltrating CD8+ T cells persist as clonal expansions in the cerebrospinal fluid and blood.

Authors:  Christian Skulina; Stephan Schmidt; Klaus Dornmair; Holger Babbe; Axel Roers; Klaus Rajewsky; Hartmut Wekerle; Reinhard Hohlfeld; Norbert Goebels
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-24       Impact factor: 11.205

10.  The InterPro protein families database: the classification resource after 15 years.

Authors:  Alex Mitchell; Hsin-Yu Chang; Louise Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; Claudia Rato; Siew-Yit Yong; Alex Bateman; Marco Punta; Teresa K Attwood; Christian J A Sigrist; Nicole Redaschi; Catherine Rivoire; Ioannis Xenarios; Daniel Kahn; Dominique Guyot; Peer Bork; Ivica Letunic; Julian Gough; Matt Oates; Daniel Haft; Hongzhan Huang; Darren A Natale; Cathy H Wu; Christine Orengo; Ian Sillitoe; Huaiyu Mi; Paul D Thomas; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 16.971

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  2 in total

1.  Novel Association between STAT3 Gene Variant and Vitiligo: A Case-Control Study.

Authors:  Vaibhav Venkatesh; Deena C Mendez; T S Rajashekar; Sharath Balakrishna
Journal:  Indian J Dermatol       Date:  2022 Mar-Apr       Impact factor: 1.757

2.  The Role of Genetic Factors in the Development of Acute Respiratory Viral Infection COVID-19: Predicting Severe Course and Outcomes.

Authors:  Mikhail M Minashkin; Nataliya Y Grigortsevich; Anna S Kamaeva; Valeriya V Barzanova; Alexey A Traspov; Mikhail A Godkov; Farkhad A Ageev; Sergey S Petrikov; Nataliya V Pozdnyakova
Journal:  Biomedicines       Date:  2022-02-25
  2 in total

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