Literature DB >> 29027019

Explorative results from multistep screening for potential genetic risk loci of Alzheimer's disease in the longitudinal VITA study cohort.

Claus-Jürgen Scholz1, Heike Weber2,3, Susanne Jungwirth4,5, Walter Danielczyk4, Andreas Reif2, Karl-Heinz Tragl4, Peter Fischer4,5, Peter Riederer3, Jürgen Deckert3, Edna Grünblatt6,7.   

Abstract

Alzheimer's disease (AD) is a neurodegenerative disorder that preferentially affects individuals of advanced age. Heritability estimates for AD range between 60 and 80%, but only few genetic risk factors have been identified so far. In the present explorative study, we aimed at characterizing the genetic contribution to late-onset AD in participants of the Vienna Transdanube Aging (VITA) longitudinal birth cohort study in a two-step approach. First, we performed a genome-wide screen of pooled DNA samples (n = 588) to identify allele frequency differences between AD patients and non-AD individuals using life-time diagnoses made at the age of 80 (t = 60 months). This analysis suggested a high proportion of brain-expressed genes required for cell adhesion, cell signaling and cell morphogenesis, and also scored in known AD risk genes. In a second step, we confirmed associations using individual genotypes of top-ranked markers examining AD diagnoses as well as the dimensional scores: FULD and MMSE determined up to the age of 82.5 (t = 90 months). Taken together, our study proposes genes ANKS1B, ENST00000414107, LOC100505811, SLC22A14, QRFPR, ZDHHC8P1, ADAMTS3 and PPFIA1 as possible new candidates involved in the etiology of late-onset AD, with further research being needed to clarify their exact roles.

Entities:  

Keywords:  Alzheimer’s disease; Candidate gene identification; Cohort study; Genotyping microarray; Pooled DNA analysis

Mesh:

Year:  2017        PMID: 29027019     DOI: 10.1007/s00702-017-1796-6

Source DB:  PubMed          Journal:  J Neural Transm (Vienna)        ISSN: 0300-9564            Impact factor:   3.575


  58 in total

1.  An English translation of Alzheimer's 1907 paper, "Uber eine eigenartige Erkankung der Hirnrinde".

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Journal:  Clin Anat       Date:  1995       Impact factor: 2.414

2.  The role of vascular endothelial growth factor in neurodegeneration and cognitive decline: exploring interactions with biomarkers of Alzheimer disease.

Authors:  Timothy J Hohman; Susan P Bell; Angela L Jefferson
Journal:  JAMA Neurol       Date:  2015-05       Impact factor: 18.302

3.  Genetic variation in the choline O-acetyltransferase gene in depression and Alzheimer's disease: the VITA and Milano studies.

Authors:  Edna Grünblatt; Andreas Reif; Susanne Jungwirth; Daniela Galimberti; Heike Weber; Elio Scarpini; Cathrin Sauer; Ildiko Wichart; Michael K Rainer; Klaus Huber; Walter Danielczyk; Karl H Tragl; Jürgen Deckert; Peter Fischer; Peter Riederer
Journal:  J Psychiatr Res       Date:  2011-04-19       Impact factor: 4.791

Review 4.  Alzheimer's disease genetics: current knowledge and future challenges.

Authors:  Paul Hollingworth; Denise Harold; Lesley Jones; Michael J Owen; Julie Williams
Journal:  Int J Geriatr Psychiatry       Date:  2010-10-19       Impact factor: 3.485

Review 5.  Cognitive reserve in ageing and Alzheimer's disease.

Authors:  Yaakov Stern
Journal:  Lancet Neurol       Date:  2012-11       Impact factor: 44.182

6.  Regulation of procollagen amino-propeptide processing during mouse embryogenesis by specialization of homologous ADAMTS proteases: insights on collagen biosynthesis and dermatosparaxis.

Authors:  Carine Le Goff; Robert P T Somerville; Frederic Kesteloot; Kimerly Powell; David E Birk; Alain C Colige; Suneel S Apte
Journal:  Development       Date:  2006-04       Impact factor: 6.868

7.  Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.

Authors:  Adam C Naj; Gyungah Jun; Gary W Beecham; Li-San Wang; Badri Narayan Vardarajan; Jacqueline Buros; Paul J Gallins; Joseph D Buxbaum; Gail P Jarvik; Paul K Crane; Eric B Larson; Thomas D Bird; Bradley F Boeve; Neill R Graff-Radford; Philip L De Jager; Denis Evans; Julie A Schneider; Minerva M Carrasquillo; Nilufer Ertekin-Taner; Steven G Younkin; Carlos Cruchaga; John S K Kauwe; Petra Nowotny; Patricia Kramer; John Hardy; Matthew J Huentelman; Amanda J Myers; Michael M Barmada; F Yesim Demirci; Clinton T Baldwin; Robert C Green; Ekaterina Rogaeva; Peter St George-Hyslop; Steven E Arnold; Robert Barber; Thomas Beach; Eileen H Bigio; James D Bowen; Adam Boxer; James R Burke; Nigel J Cairns; Chris S Carlson; Regina M Carney; Steven L Carroll; Helena C Chui; David G Clark; Jason Corneveaux; Carl W Cotman; Jeffrey L Cummings; Charles DeCarli; Steven T DeKosky; Ramon Diaz-Arrastia; Malcolm Dick; Dennis W Dickson; William G Ellis; Kelley M Faber; Kenneth B Fallon; Martin R Farlow; Steven Ferris; Matthew P Frosch; Douglas R Galasko; Mary Ganguli; Marla Gearing; Daniel H Geschwind; Bernardino Ghetti; John R Gilbert; Sid Gilman; Bruno Giordani; Jonathan D Glass; John H Growdon; Ronald L Hamilton; Lindy E Harrell; Elizabeth Head; Lawrence S Honig; Christine M Hulette; Bradley T Hyman; Gregory A Jicha; Lee-Way Jin; Nancy Johnson; Jason Karlawish; Anna Karydas; Jeffrey A Kaye; Ronald Kim; Edward H Koo; Neil W Kowall; James J Lah; Allan I Levey; Andrew P Lieberman; Oscar L Lopez; Wendy J Mack; Daniel C Marson; Frank Martiniuk; Deborah C Mash; Eliezer Masliah; Wayne C McCormick; Susan M McCurry; Andrew N McDavid; Ann C McKee; Marsel Mesulam; Bruce L Miller; Carol A Miller; Joshua W Miller; Joseph E Parisi; Daniel P Perl; Elaine Peskind; Ronald C Petersen; Wayne W Poon; Joseph F Quinn; Ruchita A Rajbhandary; Murray Raskind; Barry Reisberg; John M Ringman; Erik D Roberson; Roger N Rosenberg; Mary Sano; Lon S Schneider; William Seeley; Michael L Shelanski; Michael A Slifer; Charles D Smith; Joshua A Sonnen; Salvatore Spina; Robert A Stern; Rudolph E Tanzi; John Q Trojanowski; Juan C Troncoso; Vivianna M Van Deerlin; Harry V Vinters; Jean Paul Vonsattel; Sandra Weintraub; Kathleen A Welsh-Bohmer; Jennifer Williamson; Randall L Woltjer; Laura B Cantwell; Beth A Dombroski; Duane Beekly; Kathryn L Lunetta; Eden R Martin; M Ilyas Kamboh; Andrew J Saykin; Eric M Reiman; David A Bennett; John C Morris; Thomas J Montine; Alison M Goate; Deborah Blacker; Debby W Tsuang; Hakon Hakonarson; Walter A Kukull; Tatiana M Foroud; Jonathan L Haines; Richard Mayeux; Margaret A Pericak-Vance; Lindsay A Farrer; Gerard D Schellenberg
Journal:  Nat Genet       Date:  2011-04-03       Impact factor: 38.330

8.  The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays.

Authors:  Oliver S P Davis; Robert Plomin; Leonard C Schalkwyk
Journal:  Bioinformatics       Date:  2008-11-12       Impact factor: 6.937

9.  Analysis of pooled DNA samples on high density arrays without prior knowledge of differential hybridization rates.

Authors:  Stuart Macgregor; Peter M Visscher; Grant Montgomery
Journal:  Nucleic Acids Res       Date:  2006-04-20       Impact factor: 16.971

10.  Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.

Authors:  Gary W Beecham; Kara Hamilton; Adam C Naj; Eden R Martin; Matt Huentelman; Amanda J Myers; Jason J Corneveaux; John Hardy; Jean-Paul Vonsattel; Steven G Younkin; David A Bennett; Philip L De Jager; Eric B Larson; Paul K Crane; M Ilyas Kamboh; Julia K Kofler; Deborah C Mash; Linda Duque; John R Gilbert; Harry Gwirtsman; Joseph D Buxbaum; Patricia Kramer; Dennis W Dickson; Lindsay A Farrer; Matthew P Frosch; Bernardino Ghetti; Jonathan L Haines; Bradley T Hyman; Walter A Kukull; Richard P Mayeux; Margaret A Pericak-Vance; Julie A Schneider; John Q Trojanowski; Eric M Reiman; Gerard D Schellenberg; Thomas J Montine
Journal:  PLoS Genet       Date:  2014-09-04       Impact factor: 5.917

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  3 in total

Review 1.  The ANKS1B gene and its associated phenotypes: focus on CNS drug response.

Authors:  Rabha M Younis; Rachel M Taylor; Patrick M Beardsley; Joseph L McClay
Journal:  Pharmacogenomics       Date:  2019-06       Impact factor: 2.533

2.  Liprin-α1 modulates cancer cell signaling by transmembrane protein CD82 in adhesive membrane domains linked to cytoskeleton.

Authors:  Henna Pehkonen; Mira Lento; Pernilla von Nandelstadh; Artemis Filippou; Reidar Grénman; Kaisa Lehti; Outi Monni
Journal:  Cell Commun Signal       Date:  2018-07-13       Impact factor: 5.712

3.  Haploinsufficiency in the ANKS1B gene encoding AIDA-1 leads to a neurodevelopmental syndrome.

Authors:  Abigail U Carbonell; Chang Hoon Cho; Jaafar O Tindi; Pamela A Counts; Juliana C Bates; Hediye Erdjument-Bromage; Svetlana Cvejic; Alana Iaboni; Ifat Kvint; Jenny Rosensaft; Ehud Banne; Evdokia Anagnostou; Thomas A Neubert; Stephen W Scherer; Sophie Molholm; Bryen A Jordan
Journal:  Nat Commun       Date:  2019-08-06       Impact factor: 17.694

  3 in total

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