Literature DB >> 29021992

Classifying symmetrical differences and temporal change for the detection of malignant masses in mammography using deep neural networks.

Thijs Kooi1, Nico Karssemeijer1.   

Abstract

We investigate the addition of symmetry and temporal context information to a deep convolutional neural network (CNN) with the purpose of detecting malignant soft tissue lesions in mammography. We employ a simple linear mapping that takes the location of a mass candidate and maps it to either the contralateral or prior mammogram, and regions of interest (ROIs) are extracted around each location. Two different architectures are subsequently explored: (1) a fusion model employing two datastreams where both ROIs are fed to the network during training and testing and (2) a stagewise approach where a single ROI CNN is trained on the primary image and subsequently used as a feature extractor for both primary and contralateral or prior ROIs. A "shallow" gradient boosted tree classifier is then trained on the concatenation of these features and used to classify the joint representation. The baseline yielded an AUC of 0.87 with confidence interval [0.853, 0.893]. For the analysis of symmetrical differences, the first architecture where both primary and contralateral patches are presented during training obtained an AUC of 0.895 with confidence interval [0.877, 0.913], and the second architecture where a new classifier is retrained on the concatenation an AUC of 0.88 with confidence interval [0.859, 0.9]. We found a significant difference between the first architecture and the baseline at high specificity with [Formula: see text]. When using the same architectures to analyze temporal change, we yielded an AUC of 0.884 with confidence interval [0.865, 0.902] for the first architecture and an AUC of 0.879 with confidence interval [0.858, 0.898] in the second setting. Although improvements for temporal analysis were consistent, they were not found to be significant. The results show our proposed method is promising and we suspect performance can greatly be improved when more temporal data become available.

Keywords:  breast cancer; computer-aided diagnosis; convolutional neural networks; deep learning; machine learning

Year:  2017        PMID: 29021992      PMCID: PMC5633751          DOI: 10.1117/1.JMI.4.4.044501

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  45 in total

1.  Analysis of asymmetry in mammograms via directional filtering with Gabor wavelets.

Authors:  R J Ferrari; R M Rangayyan; J E Desautels; A F Frère
Journal:  IEEE Trans Med Imaging       Date:  2001-09       Impact factor: 10.048

2.  Mastering the game of Go with deep neural networks and tree search.

Authors:  David Silver; Aja Huang; Chris J Maddison; Arthur Guez; Laurent Sifre; George van den Driessche; Julian Schrittwieser; Ioannis Antonoglou; Veda Panneershelvam; Marc Lanctot; Sander Dieleman; Dominik Grewe; John Nham; Nal Kalchbrenner; Ilya Sutskever; Timothy Lillicrap; Madeleine Leach; Koray Kavukcuoglu; Thore Graepel; Demis Hassabis
Journal:  Nature       Date:  2016-01-28       Impact factor: 49.962

3.  Use of prior mammograms in the classification of benign and malignant masses.

Authors:  Celia Varela; Nico Karssemeijer; Jan H C L Hendriks; Roland Holland
Journal:  Eur J Radiol       Date:  2005-11       Impact factor: 3.528

Review 4.  Current status and future potential of computer-aided diagnosis in medical imaging.

Authors:  K Doi
Journal:  Br J Radiol       Date:  2005       Impact factor: 3.039

Review 5.  CAD for mammography: the technique, results, current role and further developments.

Authors:  Ansgar Malich; Dorothee R Fischer; Joachim Böttcher
Journal:  Eur Radiol       Date:  2006-01-17       Impact factor: 5.315

6.  Asymmetric mammographic findings based on the fourth edition of BI-RADS: types, evaluation, and management.

Authors:  Ji Hyun Youk; Eun-Kyung Kim; Kyung Hee Ko; Min Jung Kim
Journal:  Radiographics       Date:  2008-11-18       Impact factor: 5.333

Review 7.  Symmetry and asymmetry analysis and its implications to computer-aided diagnosis: A review of the literature.

Authors:  Sheena Xin Liu
Journal:  J Biomed Inform       Date:  2009-07-15       Impact factor: 6.317

8.  Analysis of structural similarity in mammograms for detection of bilateral asymmetry.

Authors:  Paola Casti; Arianna Mencattini; Marcello Salmeri; Rangaraj M Rangayyan
Journal:  IEEE Trans Med Imaging       Date:  2014-10-28       Impact factor: 10.048

9.  A new 2.5D representation for lymph node detection using random sets of deep convolutional neural network observations.

Authors:  Holger R Roth; Le Lu; Ari Seff; Kevin M Cherry; Joanne Hoffman; Shijun Wang; Jiamin Liu; Evrim Turkbey; Ronald M Summers
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

10.  Computer-aided detection of prostate cancer in MRI.

Authors:  Geert Litjens; Oscar Debats; Jelle Barentsz; Nico Karssemeijer; Henkjan Huisman
Journal:  IEEE Trans Med Imaging       Date:  2014-05       Impact factor: 10.048

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  4 in total

1.  Fully automated detection of breast cancer in screening MRI using convolutional neural networks.

Authors:  Mehmet Ufuk Dalmış; Suzan Vreemann; Thijs Kooi; Ritse M Mann; Nico Karssemeijer; Albert Gubern-Mérida
Journal:  J Med Imaging (Bellingham)       Date:  2018-01-11

2.  An interpretable classifier for high-resolution breast cancer screening images utilizing weakly supervised localization.

Authors:  Yiqiu Shen; Nan Wu; Jason Phang; Jungkyu Park; Kangning Liu; Sudarshini Tyagi; Laura Heacock; S Gene Kim; Linda Moy; Kyunghyun Cho; Krzysztof J Geras
Journal:  Med Image Anal       Date:  2020-12-16       Impact factor: 8.545

3.  Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening.

Authors:  Nan Wu; Jason Phang; Jungkyu Park; Yiqiu Shen; Zhe Huang; Masha Zorin; Stanislaw Jastrzebski; Thibault Fevry; Joe Katsnelson; Eric Kim; Stacey Wolfson; Ujas Parikh; Sushma Gaddam; Leng Leng Young Lin; Kara Ho; Joshua D Weinstein; Beatriu Reig; Yiming Gao; Hildegard Toth; Kristine Pysarenko; Alana Lewin; Jiyon Lee; Krystal Airola; Eralda Mema; Stephanie Chung; Esther Hwang; Naziya Samreen; S Gene Kim; Laura Heacock; Linda Moy; Kyunghyun Cho; Krzysztof J Geras
Journal:  IEEE Trans Med Imaging       Date:  2019-10-07       Impact factor: 10.048

4.  Study on the Prediction Method of Long-term Benign and Malignant Pulmonary Lesions Based on LSTM.

Authors:  Xindong Liu; Mengnan Wang; Rukhma Aftab
Journal:  Front Bioeng Biotechnol       Date:  2022-03-02
  4 in total

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