Literature DB >> 29018946

Bidirectional terminators: an underestimated aspect of gene regulation.

François Robert1,2.   

Abstract

Recent experimental and computational work revealed that transcriptional terminators in Saccharomyces cerevisiae can terminate transcription coming from both directions. This mechanism helps budding yeast cope with the pervasive nature of transcription by limiting aberrant transcription from invading neighboring genes.

Entities:  

Keywords:  Bidirectional terminators; Cryptic transcription; Hrp1; Pervasive transcription; Saccharomyces cerevisiae; Transcription

Mesh：

Substances：

Year:  2017        PMID： 29018946     DOI： 10.1007/s00294-017-0763-y

Source DB:  PubMed          Journal:  Curr Genet        ISSN： 0172-8083            Impact factor:   3.886


  33 in total

Review 1.  Unique features of long non-coding RNA biogenesis and function.

Authors:  Jeffrey J Quinn; Howard Y Chang
Journal:  Nat Rev Genet       Date:  2016-01       Impact factor: 53.242

2.  Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation.

Authors:  Amita A Joshi; Kevin Struhl
Journal:  Mol Cell       Date:  2005-12-22       Impact factor: 17.970

3.  Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy.

Authors:  Sarah J Hainer; Joseph A Martens
Journal:  Mol Cell Biol       Date:  2011-07-05       Impact factor: 4.272

4.  Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

Authors:  Michael J Carrozza; Bing Li; Laurence Florens; Tamaki Suganuma; Selene K Swanson; Kenneth K Lee; Wei-Jong Shia; Scott Anderson; John Yates; Michael P Washburn; Jerry L Workman
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

5.  The replication-independent histone H3-H4 chaperones HIR, ASF1, and RTT106 co-operate to maintain promoter fidelity.

Authors:  Andrea C Silva; Xiaomeng Xu; Hyun-Soo Kim; Jeffrey Fillingham; Thomas Kislinger; Thomas A Mennella; Michael-Christopher Keogh
Journal:  J Biol Chem       Date:  2011-11-29       Impact factor: 5.157

6.  Transcription elongation factors repress transcription initiation from cryptic sites.

Authors:  Craig D Kaplan; Lisa Laprade; Fred Winston
Journal:  Science       Date:  2003-08-22       Impact factor: 47.728

7.  The Rtt106 histone chaperone is functionally linked to transcription elongation and is involved in the regulation of spurious transcription from cryptic promoters in yeast.

Authors:  David Imbeault; Lynda Gamar; Anne Rufiange; Eric Paquet; Amine Nourani
Journal:  J Biol Chem       Date:  2008-08-15       Impact factor: 5.157

8.  Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes.

Authors:  Yaya Chu; Rajna Simic; Marcie H Warner; Karen M Arndt; Gregory Prelich
Journal:  EMBO J       Date:  2007-10-18       Impact factor: 11.598

9.  Bidirectional promoters generate pervasive transcription in yeast.

Authors:  Zhenyu Xu; Wu Wei; Julien Gagneur; Fabiana Perocchi; Sandra Clauder-Münster; Jurgi Camblong; Elisa Guffanti; Françoise Stutz; Wolfgang Huber; Lars M Steinmetz
Journal:  Nature       Date:  2009-01-25       Impact factor: 49.962

10.  Survey of cryptic unstable transcripts in yeast.

Authors:  Jessica M Vera; Robin D Dowell
Journal:  BMC Genomics       Date:  2016-04-26       Impact factor: 3.969
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