| Literature DB >> 29018800 |
Sarah Svenningsen1, Parameswaran Nair1,2.
Abstract
Guidelines for the management of severe asthma do not emphasize the measurement of the inflammatory component of airway disease to indicate appropriate treatments or to monitor response to treatment. Inflammation is a central component of asthma and contributes to symptoms, physiological, and structural abnormalities. It can be assessed by a number of endotyping strategies based on "omics" technology such as proteomics, transcriptomics, and metabolomics. It can also be assessed using simple cellular responses by quantitative cytometry in sputum. Bronchitis may be eosinophilic, neutrophilic, mixed-granulocytic, or paucigranulocytic (eosinophils and neutrophils not elevated). Eosinophilic bronchitis is usually a Type 2 (T2)-driven process and therefore a sputum eosinophilia of greater than 3% usually indicates a response to treatment with corticosteroids or novel therapies directed against T2 cytokines such as IL-4, IL-5, and IL-13. Neutrophilic bronchitis represents a non-T2-driven disease, which is generally a predictor of response to antibiotics and may be a predictor to therapies targeted at pathways that lead to neutrophil recruitment such as TNF, IL-1, IL-6, IL-8, IL-23, and IL-17. Paucigranulocytic disease may not warrant anti-inflammatory therapy. These patients, whose symptoms may be driven largely by airway hyper-responsiveness may benefit from smooth muscle-directed therapies such as bronchial thermoplasty or mast-cell directed therapies. This review will briefly summarize the current knowledge regarding "omics-based signatures" and cellular endotyping of severe asthma and give an overview of segmentation of asthma therapeutics guided by the endotype.Entities:
Keywords: endotype; omics; severe asthma; sputum cytometry; type 2-high asthma; type 2-low asthma
Year: 2017 PMID: 29018800 PMCID: PMC5622943 DOI: 10.3389/fmed.2017.00158
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
Summary of transcriptomics studies.
| Reference | Subjects | Transcriptomic analysis | Computational analysis | Predictive investigation? | |
|---|---|---|---|---|---|
| Approach | Result | ||||
| Bigler et al. ( | Severe asthma non-smokers ( | Microarray | Whole-genome gene expression data were filtered and 1,693 entities differentially expressed between severe asthmatics and non-asthmatics (“severe asthma disease signature”) were subjected to unsupervised hierarchical clustering and topological analysis | Two clusters: “Severe asthma-enriched cluster” and “mixed cluster” | No |
| Woodruff et al. ( | Mild-to-moderate asthma ( | Microarray and qPCR | Unsupervised hierarchical clustering based on the gene expression profile of three IL-13-inducible genes (POSTN, CLCA1, and SERPINB2) | Two clusters: “Th2-high” and “Th2-low” asthma | Yes, ICS response |
| Wilson et al. ( | Severe asthma non-smokers ( | Microarray | No cluster analysis. Association of gene expression profiles with eosinophil and neutrophil counts evaluated using a general linear model | NA | No |
| Baines et al. ( | Adults with stable asthma ( | qPCR | Whole-genome gene expression data (22,218 entities) were filtered and 7,436 entities present in all asthmatics were subjected to unsupervised hierarchical clustering | Three “transcriptional asthma phenotypes” | Yes, ICS response |
| Peters et al. ( | Asthma ( | qPCR | Supervised analysis of gene expression profiles of 14 genes relevant to Th2 inflammation | Single quantitative metric: “Th2 gene mean” | Yes, Th2-high and Th2-low endotype |
| Yan et al. ( | Asthma ( | Microarray | 5,500 gene expression profiles from 186 Kyoto Encyclopedia of Genes and Genomes pathways were used to assess the pathway-based distance between samples followed by unsupervised k-means clustering | Three “transcriptomic endotypes of asthma” | No |
| Kuo et al. ( | Moderate-to-severe asthma ( | Microarray | 508 differentially expressed genes between eosinophil (≥1.5%) and non-eosinophil (<1.5%) associated sputum inflammation were subjected to unbiased hierarchical clustering | Three “transcriptome-associated clusters” | No |
| Hekking et al. ( | Adults with adult-onset ( | Microarray | 105 predefined genes associated with the presence of asthma, leukocytes, and induced lung injury were subjected to gene set variation analysis to form gene signatures associated with adult-onset severe asthma | Significantly different asthma, leukocyte, and induced lung injury gene signatures in adult-onset severe asthma patients (bronchial brushings | No |
Figure 1Our therapeutic strategy in severe asthma guided by inflammatory endotype and severity of airway hyper-responsiveness.
Figure 2General scheme to choose the appropriate monoclonal antibody based on simple clinical features.