| Literature DB >> 29018608 |
Zhongfu Yang1, Gang Nie1, Ling Pan1, Yan Zhang1, Linkai Huang1, Xiao Ma1, Xinquan Zhang1.
Abstract
Italian ryegrass (Lolium multiflorum) is an important cool-season, annual forage crop for the grassland rotation system in Southern China. The primary aim of breeding programs is always to seek to improve forage quality in the animal productivity system; however, it is time- and labor-consuming when analyzed excessive large number of samples. The main objectives of this study were to construct near-infrared reflectance spectroscopy (NIRS) models to predict the forage chemistry quality of Italian ryegrass including the concentrations of crude protein (CP), acid detergent fiber (ADF), neutral detergent fiber (NDF), and water soluble carbohydrate (WSC). The results showed that a broader range of CP, NDF, ADF and WSC contents (%DM) were obtained (4.45-30.60, 21.29-60.47, 11.66-36.17 and 3.95-51.52, respectively) from the samples selected for developing NIRS models. In addition, the critical wavelengths identified in this study to construct optimal NIRS models were located in 4,247-6,102 and 4,247-5,450 cm-1 for CP and NDF content, and both wavelengths 5,446-6,102 and 4,247-4,602 cm-1 could for ADF and WSC. Finally, the optimal models were developed based on the laboratory data and the spectral information by partial least squares (PLS) regression, with relatively high coefficients of determination (R2CV, CP = 0.99, NDF = 0.94, ADF = 0.92, WSC = 0.88), ratio of prediction to devitation (RPD, CP = 8.58, NDF = 4.25, ADF = 3.64, WSC = 3.10). The further statistics of prediction errors relative to laboratory (PRL) and the range error ratio (RER) give excellent assessments of the models with the PRL ratios lower than 2 and the RER values greater than 10. The NIRS models were validated using a completely independent set of samples and have coefficients of determination (R2V, CP = 0.99, NDF = 0.91, ADF = 0.95, WSC = 0.91) and ratio of prediction to deviation (RPD, CP = 9.37, NDF = 3.44, ADF = 4.40, WSC = 3.39). The result suggested that routine screening for forage quality parameters with large numbers of samples is available with the NIRS model in Italian ryegrass breeding programs, as well as facilitating graziers to monitor the forage development stage for improving grazing efficiency.Entities:
Keywords: Forage quality; Lolium multiflorum; Multivariate calibration; Near-infrared spectroscopy
Year: 2017 PMID: 29018608 PMCID: PMC5629960 DOI: 10.7717/peerj.3867
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
The information of Italian ryegrass in this study.
| Materials | Origins | Sample number | Materials | Origins | Sample number |
|---|---|---|---|---|---|
| Changjiang No.2 | Sichuan Agricultural University | 24 | Changjiang No.2 × Ganxuan No. 1 | Sichuan Agricultural University | 13 |
| Tetragold | Barenbrug Company | 21 | Z3 | Sichuan Agricultural University | 15 |
| Aubade | FF Company | 9 | Splendor × Ganxuan No. 1 | Sichuan Agricultural University | 10 |
| Splendor | DLF Company | 10 | greenland × Ganxuan No. 1 | Sichuan Agricultural University | 13 |
| Jumbo | Barenbrug Company | 9 | Splendor × Aubade | Sichuan Agricultural University | 11 |
| Chuannong No1. | Sichuan Agricultural University | 25 | Group B | Sichuan Agricultural University | 21 |
| Barwoltra | Barenbrug Company | 9 | Chenqu × Ganxuan No. 1 | Sichuan Agricultural University | 11 |
| Diamond T | Clover Group | 9 | Changjiang No.2 × Tetragold | Sichuan Agricultural University | 15 |
| Blue Heaven | Clover Group | 10 | Jumbo × Ganxuan No. 1 | Sichuan Agricultural University | 11 |
| Shangnong Tetraploid | Shanghai Jiao Tong University | 10 | Tetragold × Blue Heaven | Sichuan Agricultural University | 22 |
| C8 | Sichuan Agricultural University | 5 | Chenqu × Aubade | Sichuan Agricultural University | 6 |
| Abundant | DLF Company | 10 | Diamond T × Changjiang No.2 | Sichuan Agricultural University | 6 |
| Jivet | DLF Company | 9 | Barwoltra × Splendor | Sichuan Agricultural University | 4 |
| Group A | Sichuan Agricultural University | 16 | Barwoltra × liaoyuan | Sichuan Agricultural University | 4 |
| Angus No. 1 | DLF Company | 20 | Z4 | Sichuan Agricultural University | 10 |
| Double Barrel | DLF Company | 10 | C7 | Sichuan Agricultural University | 5 |
| Ganxuan No. 1 | Jiangxi Livestock Technologies Popularizing Station | 10 | Aderenalin | Beijin Green Animal Husbandry S&T Development CO.,LTD | 10 |
Figure 1Quality parameters content.
Box and whisker diagrams of the reference values (i.e., values obtained using conventional wet chemistry) measured for quality parameters content (%DM), including crude protein (CP), acid detergent fiber (ADF), neutral detergent fiber (NDF) and water soluble carbohydrate (WSC) in Italian ryegrass. Box plots show median values (solid horizontal lines), 50th percentile values of the data range (box outlines) and whiskers 100th percentile values of data (whiskers), with the exception of the outliers shown as individual points.
Summary statistics calibration and validation sets of CP, NDF, ADF and WSC contents (%DM) analyzed by standard wet chemistry methods in Italian ryegrass from the calibration and the validation sets.
| Parameter | Calibration | Validation | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Mean | SD | Min | Max | Mean | SD | Min | Max | |||
| CP | 93 | 12.94 | 5.82 | 4.45 | 30.60 | 30 | 12.80 | 5.36 | 5.10 | 25.53 |
| NDF | 93 | 40.47 | 9.48 | 21.29 | 60.47 | 30 | 40.48 | 8.95 | 24.14 | 55.41 |
| ADF | 93 | 22.92 | 6.12 | 11.66 | 36.17 | 30 | 22.92 | 5.81 | 13.23 | 33.88 |
| WSC | 93 | 19.93 | 9.63 | 3.95 | 51.52 | 30 | 19.65 | 8.68 | 5.33 | 39.90 |
Notes.
number of samples
standard deviation
minimum value
maximum value
Figure 2NIR spectra of each Italian ryegrass sample.
NIR spectra of each Italian ryegrass sample in the wavelengths range of 4,000–12,500 cm−1.
Cross-validation statistics of NIRS calibrations for the estimation of CP, NDF, ADF and WSC contents (%DM) in Italian ryegrass obtained by PLS regression.
| Parameter | SCM | Spectrum range (cm−1) | Ranks | RMSECV | RPDC | SELC | PRLC | RER | |
|---|---|---|---|---|---|---|---|---|---|
| CP | FD +MSC | 4,247–6,102 | 10 | 0.99 | 0.68 | 8.58 | 1.56 | 0.43 | 38.57 |
| NDF | MSC | 4,247–5,450 | 7 | 0.94 | 2.23 | 4.25 | 1.62 | 1.38 | 17.57 |
| ADF | FD | 4,247–4,602; 5,446–6,102 | 6 | 0.92 | 1.68 | 3.64 | 1.43 | 1.17 | 14.59 |
| WSC | MMN | 4,247–4,602; 5,446–6,102 | 7 | 0.88 | 3.11 | 3.10 | 1.66 | 1.88 | 15.30 |
Notes.
scatter correction methods
number of principal component used for calibration
determination coefficient of cross-validation
root mean square error of cross-validation
ratio of prediction to deviation for the calibration (SD/RMSECV)
standard error of laboratory in calibration
prediction error relative to laboratory of calibration models
range error ratio for the calibration models (max–min)/RMSECV
Figure 3Regression coefficients of the PLS models.
Regression coefficients of the PLS models for CP (A), NDF (B), ADF (C), and WSC (D).
External validation statistics obtained from regression equations of laboratory values of CP, NDF, ADF and WSC contents (% DM) in Italian ryegrass and NIRS predicted values for the validation set.
| Parameter | RMSEP | RPDP | SELV | PRLP | RERP | |
|---|---|---|---|---|---|---|
| CP | 0.99 | 0.57 | 9.37 | 1.41 | 0.41 | 35.72 |
| NDF | 0.91 | 2.60 | 3.44 | 1.77 | 1.47 | 12.03 |
| ADF | 0.95 | 1.32 | 4.40 | 1.29 | 1.02 | 15.64 |
| WSC | 0.91 | 2.56 | 3.39 | 1.64 | 1.56 | 13.50 |
Notes.
coefficient of determination of prediction models
root mean square error of prediction
ratio of prediction to deviation for the prediction models (SD/RMSEP)
standard error of laboratory in validation
prediction error relative to laboratory of prediction models
range error ratio for the prediction models (max–min)/RMSEP
Figure 4Relationship between values measured with the standard reference methods and values predicted by NIRS.
Relationship between values measured with the standard wet chemistry methods (x axis) and values predicted by NIRS (y axis) in the calibration and external validation sets for CP (A, E), NDF (B, F), ADF (C, G) and WSC (D, H) in Italian ryegrass. The solid line is the relationship between measured and predicted values in the calibration and validation sets for quality parameters.