Literature DB >> 29017071

NMR studies of ligand binding.

Christoph Nitsche1, Gottfried Otting2.   

Abstract

NMR spectroscopy is an established tool in drug discovery, but its strength is commonly regarded to be largely confined to the early stages of hit discovery and fragment based drug design, where NMR offers unique capabilities of characterizing the binding modes of ligand molecules that bind sufficiently weakly to be in rapid exchange between bound and free state. Here we, first, provide a meta-review of recent reviews on NMR studies of ligand binding and, second, review recent progress towards NMR characterization of the ligand binding mode in stable protein-ligand complexes, with particular emphasis on the global positioning system (GPS) approach enabled by paramagnetic lanthanide tags.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29017071     DOI: 10.1016/j.sbi.2017.09.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  15 in total

1.  Unravelling the covalent binding of zampanolide and taccalonolide AJ to a minimalist representation of a human microtubule.

Authors:  Pedro A Sánchez-Murcia; Alberto Mills; Álvaro Cortés-Cabrera; Federico Gago
Journal:  J Comput Aided Mol Des       Date:  2019-05-31       Impact factor: 3.686

2.  Using tert-Butyl Groups in a Ligand To Identify Its Binding Site on a Protein.

Authors:  Wan-Na Chen; Gottfried Otting
Journal:  ACS Med Chem Lett       Date:  2018-01-12       Impact factor: 4.345

3.  Trimethylsilyl tag for probing protein-ligand interactions by NMR.

Authors:  Walter Becker; Luke A Adams; Bim Graham; Gabriel E Wagner; Klaus Zangger; Gottfried Otting; Christoph Nitsche
Journal:  J Biomol NMR       Date:  2018-03-21       Impact factor: 2.835

4.  Probing Structural Changes among Analogous Inhibitor-Bound Forms of HIV-1 Protease and a Drug-Resistant Mutant in Solution by Nuclear Magnetic Resonance.

Authors:  Shahid N Khan; John D Persons; Janet L Paulsen; Michel Guerrero; Celia A Schiffer; Nese Kurt-Yilmaz; Rieko Ishima
Journal:  Biochemistry       Date:  2018-02-19       Impact factor: 3.162

5.  High-speed compressed-sensing fluorescence lifetime imaging microscopy of live cells.

Authors:  Yayao Ma; Youngjae Lee; Catherine Best-Popescu; Liang Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-19       Impact factor: 12.779

6.  Experiences From Developing Software for Large X-Ray Crystallography-Driven Protein-Ligand Studies.

Authors:  Nicholas M Pearce; Rachael Skyner; Tobias Krojer
Journal:  Front Mol Biosci       Date:  2022-04-11

Review 7.  Paramagnetic NMR in drug discovery.

Authors:  Charlotte A Softley; Mark J Bostock; Grzegorz M Popowicz; Michael Sattler
Journal:  J Biomol NMR       Date:  2020-06-10       Impact factor: 2.835

Review 8.  A Practical Perspective on the Roles of Solution NMR Spectroscopy in Drug Discovery.

Authors:  Qingxin Li; CongBao Kang
Journal:  Molecules       Date:  2020-06-28       Impact factor: 4.411

9.  Real-Time Insights into Biological Events: In-Cell Processes and Protein-Ligand Interactions.

Authors:  Linda Cerofolini; Stefano Giuntini; Letizia Barbieri; Matteo Pennestri; Anna Codina; Marco Fragai; Lucia Banci; Enrico Luchinat; Enrico Ravera
Journal:  Biophys J       Date:  2018-12-06       Impact factor: 4.033

10.  The Photocatalyzed Thiol-ene reaction: A New Tag to Yield Fast, Selective and reversible Paramagnetic Tagging of Proteins.

Authors:  Maxime Denis; Charlotte Softley; Stefano Giuntini; Matteo Gentili; Enrico Ravera; Giacomo Parigi; Marco Fragai; Grzegorz Popowicz; Michael Sattler; Claudio Luchinat; Linda Cerofolini; Cristina Nativi
Journal:  Chemphyschem       Date:  2020-03-19       Impact factor: 3.102

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