Literature DB >> 29016825

NLPReViz: an interactive tool for natural language processing on clinical text.

Gaurav Trivedi1, Phuong Pham2, Wendy W Chapman3, Rebecca Hwa1,2, Janyce Wiebe1,2, Harry Hochheiser1,4.   

Abstract

The gap between domain experts and natural language processing expertise is a barrier to extracting understanding from clinical text. We describe a prototype tool for interactive review and revision of natural language processing models of binary concepts extracted from clinical notes. We evaluated our prototype in a user study involving 9 physicians, who used our tool to build and revise models for 2 colonoscopy quality variables. We report changes in performance relative to the quantity of feedback. Using initial training sets as small as 10 documents, expert review led to final F1scores for the "appendiceal-orifice" variable between 0.78 and 0.91 (with improvements ranging from 13.26% to 29.90%). F1for "biopsy" ranged between 0.88 and 0.94 (-1.52% to 11.74% improvements). The average System Usability Scale score was 70.56. Subjective feedback also suggests possible design improvements.
© The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Keywords:  electronic health records; machine learning; medical informatics; natural language processing (NLP); user-computer interface

Mesh:

Year:  2018        PMID: 29016825      PMCID: PMC6381768          DOI: 10.1093/jamia/ocx070

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  9 in total

1.  Developing a natural language processing application for measuring the quality of colonoscopy procedures.

Authors:  Henk Harkema; Wendy W Chapman; Melissa Saul; Evan S Dellon; Robert E Schoen; Ateev Mehrotra
Journal:  J Am Med Inform Assoc       Date:  2011-09-21       Impact factor: 4.497

2.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

3.  Visual Classifier Training for Text Document Retrieval.

Authors:  F Heimerl; S Koch; H Bosch; T Ertl
Journal:  IEEE Trans Vis Comput Graph       Date:  2012-12       Impact factor: 4.579

4.  The Word Tree, an interactive visual concordance.

Authors:  Martin Wattenberg; Fernanda B Viégas
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Nov-Dec       Impact factor: 4.579

5.  Automated concept-level information extraction to reduce the need for custom software and rules development.

Authors:  Leonard W D'Avolio; Thien M Nguyen; Sergey Goryachev; Louis D Fiore
Journal:  J Am Med Inform Assoc       Date:  2011-06-22       Impact factor: 4.497

6.  Assisted annotation of medical free text using RapTAT.

Authors:  Glenn T Gobbel; Jennifer Garvin; Ruth Reeves; Robert M Cronin; Julia Heavirland; Jenifer Williams; Allison Weaver; Shrimalini Jayaramaraja; Dario Giuse; Theodore Speroff; Steven H Brown; Hua Xu; Michael E Matheny
Journal:  J Am Med Inform Assoc       Date:  2014-01-15       Impact factor: 4.497

7.  Interactive machine learning for health informatics: when do we need the human-in-the-loop?

Authors:  Andreas Holzinger
Journal:  Brain Inform       Date:  2016-03-02

8.  Visual analytics for concept exploration in subspaces of patient groups : Making sense of complex datasets with the Doctor-in-the-loop.

Authors:  Michael Hund; Dominic Böhm; Werner Sturm; Michael Sedlmair; Tobias Schreck; Torsten Ullrich; Daniel A Keim; Ljiljana Majnaric; Andreas Holzinger
Journal:  Brain Inform       Date:  2016-03-21

9.  Canary: An NLP Platform for Clinicians and Researchers.

Authors:  Shervin Malmasi; Nicolae L Sandor; Naoshi Hosomura; Matt Goldberg; Stephen Skentzos; Alexander Turchin
Journal:  Appl Clin Inform       Date:  2017-05-03       Impact factor: 2.342

  9 in total
  8 in total

1.  Interactive NLP in Clinical Care: Identifying Incidental Findings in Radiology Reports.

Authors:  Gaurav Trivedi; Esmaeel R Dadashzadeh; Robert M Handzel; Wendy W Chapman; Shyam Visweswaran; Harry Hochheiser
Journal:  Appl Clin Inform       Date:  2019-09-04       Impact factor: 2.342

2.  Editor's Spotlight/Take 5: Effectiveness of Preoperative Antibiotics in Preventing Surgical Site Infection After Common Soft Tissue Procedures of the Hand.

Authors:  Seth S Leopold
Journal:  Clin Orthop Relat Res       Date:  2018-04       Impact factor: 4.176

3.  Extraction of Temporal Information from Clinical Narratives.

Authors:  Gandhimathi Moharasan; Tu-Bao Ho
Journal:  J Healthc Inform Res       Date:  2019-02-27

4.  RAMPVIS: Answering the challenges of building visualisation capabilities for large-scale emergency responses.

Authors:  M Chen; A Abdul-Rahman; D Archambault; J Dykes; P D Ritsos; A Slingsby; T Torsney-Weir; C Turkay; B Bach; R Borgo; A Brett; H Fang; R Jianu; S Khan; R S Laramee; L Matthews; P H Nguyen; R Reeve; J C Roberts; F P Vidal; Q Wang; J Wood; K Xu
Journal:  Epidemics       Date:  2022-04-28       Impact factor: 5.324

5.  Translational NLP: A New Paradigm and General Principles for Natural Language Processing Research.

Authors:  Denis Newman-Griffis; Jill Fain Lehman; Carolyn Rosé; Harry Hochheiser
Journal:  Proc Conf       Date:  2021-06

6.  Usability Evaluation of an Unstructured Clinical Document Query Tool for Researchers.

Authors:  Gretchen Hultman; Reed McEwan; Serguei Pakhomov; Elizabeth Lindemann; Steven Skube; Genevieve B Melton
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18

7.  Interactive Exploration of Longitudinal Cancer Patient Histories Extracted From Clinical Text.

Authors:  Zhou Yuan; Sean Finan; Jeremy Warner; Guergana Savova; Harry Hochheiser
Journal:  JCO Clin Cancer Inform       Date:  2020-05

8.  Inclusion of Clinicians in the Development and Evaluation of Clinical Artificial Intelligence Tools: A Systematic Literature Review.

Authors:  Stephanie Tulk Jesso; Aisling Kelliher; Harsh Sanghavi; Thomas Martin; Sarah Henrickson Parker
Journal:  Front Psychol       Date:  2022-04-07
  8 in total

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