Literature DB >> 28993150

Applications of sequence coevolution in membrane protein biochemistry.

John M Nicoludis1, Rachelle Gaudet2.   

Abstract

Recently, protein sequence coevolution analysis has matured into a predictive powerhouse for protein structure and function. Direct methods, which use global statistical models of sequence coevolution, have enabled the prediction of membrane and disordered protein structures, protein complex architectures, and the functional effects of mutations in proteins. The field of membrane protein biochemistry and structural biology has embraced these computational techniques, which provide functional and structural information in an otherwise experimentally-challenging field. Here we review recent applications of protein sequence coevolution analysis to membrane protein structure and function and highlight the promising directions and future obstacles in these fields. We provide insights and guidelines for membrane protein biochemists who wish to apply sequence coevolution analysis to a given experimental system.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  ABC transporters; Clustered protocadherin; Conformational changes; Membrane proteins; Protein-protein interactions; Sequence coevolution analysis

Mesh:

Substances:

Year:  2017        PMID: 28993150      PMCID: PMC5807202          DOI: 10.1016/j.bbamem.2017.10.004

Source DB:  PubMed          Journal:  Biochim Biophys Acta Biomembr        ISSN: 0005-2736            Impact factor:   3.747


  162 in total

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