Literature DB >> 28992423

Housekeeping and tissue-specific cis-regulatory elements: Recipes for specificity and recipes for activity.

Marta Russo1, Gioacchino Natoli1, Serena Ghisletti2.   

Abstract

Cell type-specific and housekeeping enhancers and promoters collectively control the transcriptional output of mammalian cells. Recent data clarify how DNA sequence features on the one hand control functional coupling of promoters with selected enhancers, and on the other impart high level of activity to a broad range of regulatory elements.

Entities:  

Keywords:  ETS; chromatin; core-promoters; enhancers; housekeeping genes; transcription

Mesh：

Substances：

Year:  2017        PMID： 28992423      PMCID： PMC5927642          DOI： 10.1080/21541264.2017.1378158

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  27 in total

1.  New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.

Authors:  T Lagrange; A N Kapanidis; H Tang; D Reinberg; R H Ebright
Journal:  Genes Dev       Date:  1998-01-01       Impact factor: 11.361

2.  The organization of the histone genes in Drosophila melanogaster: functional and evolutionary implications.

Authors:  R P Lifton; M L Goldberg; R W Karp; D S Hogness
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

3.  Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Authors:  Cosmas D Arnold; Daniel Gerlach; Christoph Stelzer; Łukasz M Boryń; Martina Rath; Alexander Stark
Journal:  Science       Date:  2013-01-17       Impact factor: 47.728

4.  Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals.

Authors:  Xiaohui Xie; Jun Lu; E J Kulbokas; Todd R Golub; Vamsi Mootha; Kerstin Lindblad-Toh; Eric S Lander; Manolis Kellis
Journal:  Nature       Date:  2005-02-27       Impact factor: 49.962

5.  Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.

Authors:  Leighton J Core; André L Martins; Charles G Danko; Colin T Waters; Adam Siepel; John T Lis
Journal:  Nat Genet       Date:  2014-11-10       Impact factor: 38.330

6.  A map of the cis-regulatory sequences in the mouse genome.

Authors:  Yin Shen; Feng Yue; David F McCleary; Zhen Ye; Lee Edsall; Samantha Kuan; Ulrich Wagner; Jesse Dixon; Leonard Lee; Victor V Lobanenkov; Bing Ren
Journal:  Nature       Date:  2012-08-02       Impact factor: 49.962

7.  Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers.

Authors:  Iros Barozzi; Marta Simonatto; Silvia Bonifacio; Lin Yang; Remo Rohs; Serena Ghisletti; Gioacchino Natoli
Journal:  Mol Cell       Date:  2014-05-08       Impact factor: 17.970

8.  Structural basis of core promoter recognition in a primitive eukaryote.

Authors:  Maria A Schumacher; Audrey O T Lau; Patricia J Johnson
Journal:  Cell       Date:  2003-11-14       Impact factor: 41.582

9.  Comparative genomics of Drosophila and human core promoters.

Authors:  Peter C FitzGerald; David Sturgill; Andrey Shyakhtenko; Brian Oliver; Charles Vinson
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

10.  Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes.

Authors:  Jill M Dowen; Zi Peng Fan; Denes Hnisz; Gang Ren; Brian J Abraham; Lyndon N Zhang; Abraham S Weintraub; Jurian Schujiers; Tong Ihn Lee; Keji Zhao; Richard A Young
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582
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  3 in total

1.  Chronic activation of FXR-induced liver growth with tissue-specific targeting Cyclin D1.

Authors:  Weibin Wu; Qing Wu; Xinmei Liu
Journal:  Cell Cycle       Date:  2019-06-25       Impact factor: 4.534

2.  What are housekeeping genes?

Authors:  Chintan J Joshi; Wenfan Ke; Anna Drangowska-Way; Eyleen J O'Rourke; Nathan E Lewis
Journal:  PLoS Comput Biol       Date:  2022-07-13       Impact factor: 4.779

Review 3.  Targeting the Transcriptome Through Globally Acting Components.

Authors:  Damien Parrello; Maria Vlasenok; Lincoln Kranz; Sergei Nechaev
Journal:  Front Genet       Date:  2021-09-16       Impact factor: 4.599
  3 in total

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