Literature DB >> 28991233

DNA methylation aberrancies delineate clinically distinct subsets of colorectal cancer and provide novel targets for epigenetic therapies.

D J Weisenberger1, G Liang2, H-J Lenz3.   

Abstract

Colorectal cancer (CRC) is a worldwide health concern with respect to both incidence and mortality, and as a result, CRC tumorigenesis, progression and metastasis have been heavily studied, especially with respect to identifying genetic, epigenetic, transcriptomic and proteomic profiles of disease. DNA methylation alterations are hallmarks of CRC, and epigenetic driver genes have been identified that are thought to be involved in early stages of tumorigenesis. Moreover, distinct CRC patient subgroups are organized based on DNA methylation profiles. CRC tumors displaying CpG island methylator phenotypes (CIMPs), defined as DNA hypermethylation at specific CpG islands in subsets of tumors, show high concordance with specific genetic alterations, disease risk factors and patient outcome. This review details the DNA methylation alterations in CRC, the significance of CIMP status, the development of treatments based on specific molecular profiles and the application of epigenetic therapies for CRC patient treatment.

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Year:  2017        PMID: 28991233      PMCID: PMC7491233          DOI: 10.1038/onc.2017.374

Source DB:  PubMed          Journal:  Oncogene        ISSN: 0950-9232            Impact factor:   9.867


  114 in total

Review 1.  Molecular tests for colorectal cancer screening.

Authors:  Linda J W Bosch; Beatriz Carvalho; Remond J A Fijneman; Connie R Jimenez; Herbert M Pinedo; Manon van Engeland; Gerrit A Meijer
Journal:  Clin Colorectal Cancer       Date:  2011-03-01       Impact factor: 4.481

2.  Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.

Authors:  B H Ramsahoye; D Biniszkiewicz; F Lyko; V Clark; A P Bird; R Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

3.  Association of smoking, CpG island methylator phenotype, and V600E BRAF mutations in colon cancer.

Authors:  Wade S Samowitz; Hans Albertsen; Carol Sweeney; Jennifer Herrick; Bette J Caan; Kristin E Anderson; Roger K Wolff; Martha L Slattery
Journal:  J Natl Cancer Inst       Date:  2006-12-06       Impact factor: 13.506

Review 4.  From discovery to the clinic: the novel DNA methylation biomarker (m)SEPT9 for the detection of colorectal cancer in blood.

Authors:  Shannon R Payne
Journal:  Epigenomics       Date:  2010-08       Impact factor: 4.778

5.  Molecular detection of p16 promoter methylation in the serum of recurrent colorectal cancer patients.

Authors:  Hiroshi Nakayama; Kenji Hibi; Tsunenobu Takase; Taiji Yamazaki; Yasushi Kasai; Katsuki Ito; Seiji Akiyama; Akimasa Nakao
Journal:  Int J Cancer       Date:  2003-07-01       Impact factor: 7.396

6.  A phase I/II study of decitabine in combination with panitumumab in patients with wild-type (wt) KRAS metastatic colorectal cancer.

Authors:  I Garrido-Laguna; K A McGregor; M Wade; J Weis; W Gilcrease; L Burr; R Soldi; L Jakubowski; C Davidson; G Morrell; J D Olpin; K Boucher; D Jones; S Sharma
Journal:  Invest New Drugs       Date:  2013-03-17       Impact factor: 3.850

7.  Epigenetic silencing of microRNA-34b/c and B-cell translocation gene 4 is associated with CpG island methylation in colorectal cancer.

Authors:  Minoru Toyota; Hiromu Suzuki; Yasushi Sasaki; Reo Maruyama; Kohzoh Imai; Yasuhisa Shinomura; Takashi Tokino
Journal:  Cancer Res       Date:  2008-06-01       Impact factor: 12.701

8.  DNA methylation of the p14ARF, RASSF1A and APC1A genes as an independent prognostic factor in colorectal cancer patients.

Authors:  Torbjörn K Nilsson; Zarah M Löf-Öhlin; Xiao-Feng Sun
Journal:  Int J Oncol       Date:  2012-10-30       Impact factor: 5.650

9.  Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Authors:  Kathryn Blaschke; Kevin T Ebata; Mohammad M Karimi; Jorge A Zepeda-Martínez; Preeti Goyal; Sahasransu Mahapatra; Angela Tam; Diana J Laird; Martin Hirst; Anjana Rao; Matthew C Lorincz; Miguel Ramalho-Santos
Journal:  Nature       Date:  2013-06-30       Impact factor: 49.962

10.  A KRAS-directed transcriptional silencing pathway that mediates the CpG island methylator phenotype.

Authors:  Ryan W Serra; Minggang Fang; Sung Mi Park; Lloyd Hutchinson; Michael R Green
Journal:  Elife       Date:  2014-03-12       Impact factor: 8.140

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  28 in total

1.  SLC34A2 simultaneously promotes papillary thyroid carcinoma growth and invasion through distinct mechanisms.

Authors:  Jing He; Mingxia Zhou; Xiaoyan Li; Siwen Gu; Yun Cao; Tengfei Xing; Wei Chen; Chengyu Chu; Fei Gu; Jian Zhou; Yiting Jin; Jing Ma; Duan Ma; Qiang Zou
Journal:  Oncogene       Date:  2020-01-31       Impact factor: 9.867

2.  Impact of polymorphisms within genes involved in regulating DNA methylation in patients with metastatic colorectal cancer enrolled in three independent, randomised, open-label clinical trials: a meta-analysis from TRIBE, MAVERICC and FIRE-3.

Authors:  Alberto Puccini; Fotios Loupakis; Sebastian Stintzing; Shu Cao; Francesca Battaglin; Ryuma Togunaka; Madiha Naseem; Martin D Berger; Shivani Soni; Wu Zhang; Christoph Mancao; Bodour Salhia; Shannon M Mumenthaler; Daniel J Weisenberger; Gangning Liang; Chiara Cremolini; Volker Heinemann; Alfredo Falcone; Joshua Millstein; Heinz-Josef Lenz
Journal:  Eur J Cancer       Date:  2019-03-07       Impact factor: 9.162

3.  Genetic Regulation of DNA Methylation Yields Novel Discoveries in GWAS of Colorectal Cancer.

Authors:  Ulrike Peters; Li Hsu; Richard Barfield; Jeroen R Huyghe; Mathieu Lemire; Xinyuan Dong; Yu-Ru Su; Stefanie Brezina; Daniel D Buchanan; Jane C Figueiredo; Steven Gallinger; Marios Giannakis; Andrea Gsur; Marc J Gunter; Heather Hampel; Tabitha A Harrison; John L Hopper; Thomas J Hudson; Christopher I Li; Victor Moreno; Polly A Newcomb; Rish K Pai; Paul D P Pharoah; Amanda I Phipps; Conghui Qu; Robert S Steinfelder; Wei Sun; Aung Ko Win; Syed H Zaidi; Peter T Campbell
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2022-05-04       Impact factor: 4.090

Review 4.  Machine Learning in Epigenomics: Insights into Cancer Biology and Medicine.

Authors:  Emre Arslan; Jonathan Schulz; Kunal Rai
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2021-07-07       Impact factor: 10.680

5.  Association of GSTP1 and P16 promoter methylation with the risk of HBV-related hepatocellular carcinoma: a meta-analysis.

Authors:  Qin Li; Cunliang Deng; Ting Zhang; Xiang Li
Journal:  Onco Targets Ther       Date:  2018-09-12       Impact factor: 4.345

6.  Differential regulation of CpG island methylation within divergent and unidirectional promoters in colorectal cancer.

Authors:  Shinichi Namba; Kazuhito Sato; Shinya Kojima; Toshihide Ueno; Yoko Yamamoto; Yosuke Tanaka; Satoshi Inoue; Genta Nagae; Hisae Iinuma; Shoichi Hazama; Soichiro Ishihara; Hiroyuki Aburatani; Hiroyuki Mano; Masahito Kawazu
Journal:  Cancer Sci       Date:  2019-03-02       Impact factor: 6.716

7.  Cimp-Positive Status is More Representative in Multiple Colorectal Cancers than in Unique Primary Colorectal Cancers.

Authors:  Sandra Tapial; Susana Olmedillas-López; Daniel Rueda; María Arriba; Juan L García; Alfredo Vivas; Jessica Pérez; Laura Pena-Couso; Rocío Olivera; Yolanda Rodríguez; Mariano García-Arranz; Damián García-Olmo; Rogelio González-Sarmiento; Miguel Urioste; Ajay Goel; José Perea
Journal:  Sci Rep       Date:  2019-07-19       Impact factor: 4.379

8.  DNA Methylation Signatures and the Contribution of Age-Associated Methylomic Drift to Carcinogenesis in Early-Onset Colorectal Cancer.

Authors:  Jihoon E Joo; Mark Clendenning; Ee Ming Wong; Christophe Rosty; Khalid Mahmood; Peter Georgeson; Ingrid M Winship; Susan G Preston; Aung Ko Win; Pierre-Antoine Dugué; Harindra Jayasekara; Dallas English; Finlay A Macrae; John L Hopper; Mark A Jenkins; Roger L Milne; Graham G Giles; Melissa C Southey; Daniel D Buchanan
Journal:  Cancers (Basel)       Date:  2021-05-25       Impact factor: 6.639

Review 9.  The Protective Effect of Polyphenols for Colorectal Cancer.

Authors:  Sujuan Ding; Sheng Xu; Jun Fang; Hongmei Jiang
Journal:  Front Immunol       Date:  2020-07-10       Impact factor: 7.561

10.  Network assessment of demethylation treatment in melanoma: Differential transcriptome-methylome and antigen profile signatures.

Authors:  Zhijie Jiang; Caterina Cinti; Monia Taranta; Elisabetta Mattioli; Elisa Schena; Sakshi Singh; Rimpi Khurana; Giovanna Lattanzi; Nicholas F Tsinoremas; Enrico Capobianco
Journal:  PLoS One       Date:  2018-11-28       Impact factor: 3.240

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