Literature DB >> 28990008

Parcellation of Human Amygdala Subfields Using Orientation Distribution Function and Spectral K-means Clustering.

Qiuting Wen1, Brian D Stirling2,3, Long Sha4,3, Li Shen1, Paul J Whalen3, Yu-Chien Wu1,3.   

Abstract

Amygdala plays an important role in fear and emotional learning, which are critical for human survival. Despite the functional relevance and unique circuitry of each human amygdaloid subnuclei, there has yet to be an efficient imaging method for identifying these regions in vivo. A data-driven approach without prior knowledge provides advantages of efficient and objective assessments. The present study uses high angular and high spatial resolution diffusion magnetic resonance imaging to generate orientation distribution function, which bears distinctive microstructural features. The features were extracted using spherical harmonic decomposition to assess microstructural similarity within amygdala subfields are identified via similarity matrices using spectral k-mean clustering. The approach was tested on 32 healthy volunteers and three distinct amygdala subfields were identified including medial, posterior-superior lateral, and anterior-inferior lateral.

Entities:  

Keywords:  Amygdala; Diffusion; Orientation Distribution Function; Parcellation; Spectral Clustering; Spherical Harmonic; Subfield

Year:  2017        PMID: 28990008      PMCID: PMC5627512          DOI: 10.1007/978-3-319-54130-3_10

Source DB:  PubMed          Journal:  Comput Diffus MRI (2016)


  18 in total

1.  Characterization of anisotropy in high angular resolution diffusion-weighted MRI.

Authors:  Lawrence R Frank
Journal:  Magn Reson Med       Date:  2002-06       Impact factor: 4.668

2.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

Review 3.  Multiple-fiber reconstruction algorithms for diffusion MRI.

Authors:  Daniel C Alexander
Journal:  Ann N Y Acad Sci       Date:  2005-12       Impact factor: 5.691

4.  Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis.

Authors:  Christopher P Hess; Pratik Mukherjee; Eric T Han; Duan Xu; Daniel B Vigneron
Journal:  Magn Reson Med       Date:  2006-07       Impact factor: 4.668

5.  Directional functions for orientation distribution estimation.

Authors:  Yogesh Rathi; Oleg Michailovich; Martha E Shenton; Sylvain Bouix
Journal:  Med Image Anal       Date:  2009-02-05       Impact factor: 8.545

6.  Functionally distinct amygdala subregions identified using DTI and high-resolution fMRI.

Authors:  Nicholas L Balderston; Douglas H Schultz; Lauren Hopkins; Fred J Helmstetter
Journal:  Soc Cogn Affect Neurosci       Date:  2015-05-11       Impact factor: 3.436

7.  A reliable protocol for the manual segmentation of the human amygdala and its subregions using ultra-high resolution MRI.

Authors:  Jonathan J Entis; Priya Doerga; Lisa Feldman Barrett; Bradford C Dickerson
Journal:  Neuroimage       Date:  2012-01-05       Impact factor: 6.556

Review 8.  Organization of intra-amygdaloid circuitries in the rat: an emerging framework for understanding functions of the amygdala.

Authors:  A Pitkänen; V Savander; J E LeDoux
Journal:  Trends Neurosci       Date:  1997-11       Impact factor: 13.837

9.  Connectivity-based segmentation of human amygdala nuclei using probabilistic tractography.

Authors:  Zeynep M Saygin; David E Osher; Jean Augustinack; Bruce Fischl; John D E Gabrieli
Journal:  Neuroimage       Date:  2011-03-08       Impact factor: 6.556

10.  Deep and superficial amygdala nuclei projections revealed in vivo by probabilistic tractography.

Authors:  Dominik R Bach; Timothy E Behrens; Lúcia Garrido; Nikolaus Weiskopf; Raymond J Dolan
Journal:  J Neurosci       Date:  2011-01-12       Impact factor: 6.167

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  1 in total

1.  CBPtools: a Python package for regional connectivity-based parcellation.

Authors:  Niels Reuter; Sarah Genon; Shahrzad Kharabian Masouleh; Felix Hoffstaedter; Xiaojin Liu; Tobias Kalenscher; Simon B Eickhoff; Kaustubh R Patil
Journal:  Brain Struct Funct       Date:  2020-03-06       Impact factor: 3.270

  1 in total

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