Literature DB >> 28982716

Multiplexed Temporal Quantification of the Exercise-regulated Plasma Peptidome.

Benjamin L Parker1, James G Burchfield1, Daniel Clayton2, Thomas A Geddes1, Richard J Payne2, Bente Kiens3, Jørgen F P Wojtaszewski3, Erik A Richter3, David E James4,5.   

Abstract

Exercise is extremely beneficial to whole body health reducing the risk of a number of chronic human diseases. Some of these physiological benefits appear to be mediated via the secretion of peptide/protein hormones into the blood stream. The plasma peptidome contains the entire complement of low molecular weight endogenous peptides derived from secretion, protease activity and PTMs, and is a rich source of hormones. In the current study we have quantified the effects of intense exercise on the plasma peptidome to identify novel exercise regulated secretory factors in humans. We developed an optimized 2D-LC-MS/MS method and used multiple fragmentation methods including HCD and EThcD to analyze endogenous peptides. This resulted in quantification of 5,548 unique peptides during a time course of exercise and recovery. The plasma peptidome underwent dynamic and large changes during exercise on a time-scale of minutes with many rapidly reversible following exercise cessation. Among acutely regulated peptides, many were known hormones including insulin, glucagon, ghrelin, bradykinin, cholecystokinin and secretogranins validating the method. Prediction of bioactive peptides regulated with exercise identified C-terminal peptides from Transgelins, which were increased in plasma during exercise. In vitro experiments using synthetic peptides identified a role for transgelin peptides on the regulation of cell-cycle, extracellular matrix remodeling and cell migration. We investigated the effects of exercise on the regulation of PTMs and proteolytic processing by building a site-specific network of protease/substrate activity. Collectively, our deep peptidomic analysis of plasma revealed that exercise rapidly modulates the circulation of hundreds of bioactive peptides through a network of proteases and PTMs. These findings illustrate that peptidomics is an ideal method for quantifying changes in circulating factors on a global scale in response to physiological perturbations such as exercise. This will likely be a key method for pinpointing exercise regulated factors that generate health benefits.
© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

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Year:  2017        PMID: 28982716      PMCID: PMC5724171          DOI: 10.1074/mcp.RA117.000020

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  53 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

Review 2.  BIOPEP database and other programs for processing bioactive peptide sequences.

Authors:  Piotr Minkiewicz; Jerzy Dziuba; Anna Iwaniak; Marta Dziuba; Małgorzata Darewicz
Journal:  J AOAC Int       Date:  2008 Jul-Aug       Impact factor: 1.913

3.  A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.

Authors:  Paolo Nanni; Fredrik Levander; Giulia Roda; Alessandra Caponi; Peter James; Aldo Roda
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2009-08-07       Impact factor: 3.205

4.  Investigation of an albumin-enriched fraction of human serum and its albuminome.

Authors:  Rebekah L Gundry; Qin Fu; Christine A Jelinek; Jennifer E Van Eyk; Robert J Cotter
Journal:  Proteomics Clin Appl       Date:  2007-01-01       Impact factor: 3.494

Review 5.  Protein oxidation in aging, disease, and oxidative stress.

Authors:  B S Berlett; E R Stadtman
Journal:  J Biol Chem       Date:  1997-08-15       Impact factor: 5.157

6.  Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.

Authors:  Christian K Frese; A F Maarten Altelaar; Henk van den Toorn; Dirk Nolting; Jens Griep-Raming; Albert J R Heck; Shabaz Mohammed
Journal:  Anal Chem       Date:  2012-10-31       Impact factor: 6.986

7.  Integrative urinary peptidomics in renal transplantation identifies biomarkers for acute rejection.

Authors:  Xuefeng B Ling; Tara K Sigdel; Kenneth Lau; Lihua Ying; Irwin Lau; James Schilling; Minnie M Sarwal
Journal:  J Am Soc Nephrol       Date:  2010-02-11       Impact factor: 10.121

8.  Byonic: advanced peptide and protein identification software.

Authors:  Marshall Bern; Yong J Kil; Christopher Becker
Journal:  Curr Protoc Bioinformatics       Date:  2012-12

9.  Urinary proteomic biomarkers in coronary artery disease.

Authors:  Lukas U Zimmerli; Eric Schiffer; Petra Zürbig; David M Good; Markus Kellmann; Laetitia Mouls; Andrew R Pitt; Joshua J Coon; Roland E Schmieder; Karlheinz H Peter; Harald Mischak; Walter Kolch; Christian Delles; Anna F Dominiczak
Journal:  Mol Cell Proteomics       Date:  2007-10-19       Impact factor: 5.911

10.  Analytic framework for peptidomics applied to large-scale neuropeptide identification.

Authors:  Anna Secher; Christian D Kelstrup; Kilian W Conde-Frieboes; Charles Pyke; Kirsten Raun; Birgitte S Wulff; Jesper V Olsen
Journal:  Nat Commun       Date:  2016-05-04       Impact factor: 14.919

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  16 in total

1.  The Plethora of Angiotensin-Converting Enzyme-Processed Peptides in Mouse Plasma.

Authors:  Margarita Semis; Gabriel B Gugiu; Ellen A Bernstein; Kenneth E Bernstein; Markus Kalkum
Journal:  Anal Chem       Date:  2019-05-07       Impact factor: 6.986

2.  Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data.

Authors:  Vera Ignjatovic; Philipp E Geyer; Krishnan K Palaniappan; Jessica E Chaaban; Gilbert S Omenn; Mark S Baker; Eric W Deutsch; Jochen M Schwenk
Journal:  J Proteome Res       Date:  2019-10-11       Impact factor: 4.466

3.  Small-protein Enrichment Assay Enables the Rapid, Unbiased Analysis of Over 100 Low Abundance Factors from Human Plasma.

Authors:  Dylan J Harney; Amy T Hutchison; Zhiduan Su; Luke Hatchwell; Leonie K Heilbronn; Samantha Hocking; David E James; Mark Larance
Journal:  Mol Cell Proteomics       Date:  2019-07-15       Impact factor: 5.911

Review 4.  Peptidomic Approaches and Observations in Neurodegenerative Diseases.

Authors:  Besnik Muqaku; Patrick Oeckl
Journal:  Int J Mol Sci       Date:  2022-06-30       Impact factor: 6.208

5.  Combining mass spectrometry and machine learning to discover bioactive peptides.

Authors:  Mads Grønborg; Ulrik de Lichtenberg; Christian T Madsen; Jan C Refsgaard; Felix G Teufel; Sonny K Kjærulff; Zhe Wang; Guangjun Meng; Carsten Jessen; Petteri Heljo; Qunfeng Jiang; Xin Zhao; Bo Wu; Xueping Zhou; Yang Tang; Jacob F Jeppesen; Christian D Kelstrup; Stephen T Buckley; Søren Tullin; Jan Nygaard-Jensen; Xiaoli Chen; Fang Zhang; Jesper V Olsen; Dan Han
Journal:  Nat Commun       Date:  2022-10-20       Impact factor: 17.694

6.  The Emerging Roles of Nicotinamide Adenine Dinucleotide Phosphate Oxidase 2 in Skeletal Muscle Redox Signaling and Metabolism.

Authors:  Carlos Henríquez-Olguín; Susanna Boronat; Claudio Cabello-Verrugio; Enrique Jaimovich; Elena Hidalgo; Thomas E Jensen
Journal:  Antioxid Redox Signal       Date:  2019-11-01       Impact factor: 8.401

7.  Peptidomic analysis of endogenous plasma peptides from patients with pancreatic neuroendocrine tumours.

Authors:  Richard G Kay; Benjamin G Challis; Ruth T Casey; Geoffrey P Roberts; Claire L Meek; Frank Reimann; Fiona M Gribble
Journal:  Rapid Commun Mass Spectrom       Date:  2018-08-30       Impact factor: 2.419

8.  Biobanking for discovery of novel cardiovascular biomarkers using imaging-quantified disease burden: protocol for the longitudinal, prospective, BioHEART-CT cohort study.

Authors:  Katharine A Kott; Stephen T Vernon; Thomas Hansen; Christine Yu; Kristen J Bubb; Sean Coffey; David Sullivan; Jean Yang; John O'Sullivan; Clara Chow; Sanjay Patel; James Chong; David S Celermajer; Leonard Kritharides; Stuart M Grieve; Gemma A Figtree
Journal:  BMJ Open       Date:  2019-09-18       Impact factor: 2.692

Review 9.  Exercise, Obesity and CNS Control of Metabolic Homeostasis: A Review.

Authors:  John K Smith
Journal:  Front Physiol       Date:  2018-05-17       Impact factor: 4.566

10.  Exercise-induced peptide TAG-23 protects cardiomyocytes from reperfusion injury through regulating PKG-cCbl interaction.

Authors:  Zijie Cheng; Hao Zhang; Li Zhang; Xuejun Wang; Qijun Zhang; Mengwen Feng; Deliang Hu; Hua Li; Lingmei Qian
Journal:  Basic Res Cardiol       Date:  2021-06-25       Impact factor: 17.165

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