Literature DB >> 28976964

Chromosome biology: How to build a cohesive genome in 3D.

Rachel Patton McCord1.   

Abstract

Mesh：

Year:  2017        PMID： 28976964     DOI： 10.1038/nature24145

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  14 in total

1.  Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.

Authors:  Jessica Zuin; Jesse R Dixon; Michael I J A van der Reijden; Zhen Ye; Petros Kolovos; Rutger W W Brouwer; Mariëtte P C van de Corput; Harmen J G van de Werken; Tobias A Knoch; Wilfred F J van IJcken; Frank G Grosveld; Bing Ren; Kerstin S Wendt
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-13       Impact factor: 11.205

2.  Evolutionarily Conserved Principles Predict 3D Chromatin Organization.

Authors:  M Jordan Rowley; Michael H Nichols; Xiaowen Lyu; Masami Ando-Kuri; I Sarahi M Rivera; Karen Hermetz; Ping Wang; Yijun Ruan; Victor G Corces
Journal:  Mol Cell       Date:  2017-08-17       Impact factor: 17.970

3.  Cohesin Loss Eliminates All Loop Domains.

Authors:  Suhas S P Rao; Su-Chen Huang; Brian Glenn St Hilaire; Jesse M Engreitz; Elizabeth M Perez; Kyong-Rim Kieffer-Kwon; Adrian L Sanborn; Sarah E Johnstone; Gavin D Bascom; Ivan D Bochkov; Xingfan Huang; Muhammad S Shamim; Jaeweon Shin; Douglass Turner; Ziyi Ye; Arina D Omer; James T Robinson; Tamar Schlick; Bradley E Bernstein; Rafael Casellas; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

4.  Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.

Authors:  Darío G Lupiáñez; Katerina Kraft; Verena Heinrich; Peter Krawitz; Francesco Brancati; Eva Klopocki; Denise Horn; Hülya Kayserili; John M Opitz; Renata Laxova; Fernando Santos-Simarro; Brigitte Gilbert-Dussardier; Lars Wittler; Marina Borschiwer; Stefan A Haas; Marco Osterwalder; Martin Franke; Bernd Timmermann; Jochen Hecht; Malte Spielmann; Axel Visel; Stefan Mundlos
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

5.  Activation of proto-oncogenes by disruption of chromosome neighborhoods.

Authors:  Denes Hnisz; Abraham S Weintraub; Daniel S Day; Anne-Laure Valton; Rasmus O Bak; Charles H Li; Johanna Goldmann; Bryan R Lajoie; Zi Peng Fan; Alla A Sigova; Jessica Reddy; Diego Borges-Rivera; Tong Ihn Lee; Rudolf Jaenisch; Matthew H Porteus; Job Dekker; Richard A Young
Journal:  Science       Date:  2016-03-03       Impact factor: 47.728

6.  Formation of Chromosomal Domains by Loop Extrusion.

Authors:  Geoffrey Fudenberg; Maxim Imakaev; Carolyn Lu; Anton Goloborodko; Nezar Abdennur; Leonid A Mirny
Journal:  Cell Rep       Date:  2016-05-19       Impact factor: 9.423

Review 7.  CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation.

Authors:  Matthias Merkenschlager; Elphège P Nora
Journal:  Annu Rev Genomics Hum Genet       Date:  2016-04-18       Impact factor: 8.929

8.  Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Authors:  Jesse R Dixon; Siddarth Selvaraj; Feng Yue; Audrey Kim; Yan Li; Yin Shen; Ming Hu; Jun S Liu; Bing Ren
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

9.  Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments.

Authors:  Vlad C Seitan; Andre J Faure; Ye Zhan; Rachel Patton McCord; Bryan R Lajoie; Elizabeth Ing-Simmons; Boris Lenhard; Luca Giorgetti; Edith Heard; Amanda G Fisher; Paul Flicek; Job Dekker; Matthias Merkenschlager
Journal:  Genome Res       Date:  2013-09-03       Impact factor: 9.043

10.  Two independent modes of chromatin organization revealed by cohesin removal.

Authors:  Wibke Schwarzer; Nezar Abdennur; Anton Goloborodko; Aleksandra Pekowska; Geoffrey Fudenberg; Yann Loe-Mie; Nuno A Fonseca; Wolfgang Huber; Christian H Haering; Leonid Mirny; Francois Spitz
Journal:  Nature       Date:  2017-09-27       Impact factor: 49.962
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  1 in total

1.  The effects of common structural variants on 3D chromatin structure.

Authors:  Omar Shanta; Amina Noor; Jonathan Sebat
Journal:  BMC Genomics       Date:  2020-01-30       Impact factor: 3.969
  1 in total

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