Literature DB >> 34045455

Non-associative phase separation in an evaporating droplet as a model for prebiotic compartmentalization.

Wei Guo1, Andrew B Kinghorn2, Yage Zhang1, Qingchuan Li1,3, Aditi Dey Poonam1, Julian A Tanner4,5, Ho Cheung Shum6,7.   

Abstract

The synthetic pathways of life's building blocks are envisaged to be through a series of complex prebiotic reactions and processes. However, the strategy to compartmentalize and concentrate biopolymers under prebiotic conditions remains elusive. Liquid-liquid phase separation is a mechanism by which membraneless organelles form inside cells, and has been hypothesized as a potential mechanism for prebiotic compartmentalization. Associative phase separation of oppositely charged species has been shown to partition RNA, but the strongly negative charge exhibited by RNA suggests that RNA-polycation interactions could inhibit RNA folding and its functioning inside the coacervates. Here, we present a prebiotically plausible pathway for non-associative phase separation within an evaporating all-aqueous sessile droplet. We quantitatively investigate the kinetic pathway of phase separation triggered by the non-uniform evaporation rate, together with the Marangoni flow-driven hydrodynamics inside the sessile droplet. With the ability to undergo liquid-liquid phase separation, the drying droplets provide a robust mechanism for formation of prebiotic membraneless compartments, as demonstrated by localization and storage of nucleic acids, in vitro transcription, as well as a three-fold enhancement of ribozyme activity. The compartmentalization mechanism illustrated in this model system is feasible on wet organophilic silica-rich surfaces during early molecular evolution.

Entities:  

Year:  2021        PMID: 34045455     DOI: 10.1038/s41467-021-23410-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  61 in total

1.  Atmospheric aerosols as prebiotic chemical reactors.

Authors:  C M Dobson; G B Ellison; A F Tuck; V Vaida
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

2.  Prebiotic synthesis of protobiopolymers under alkaline ocean conditions.

Authors:  Marta Ruiz-Bermejo; Luis A Rivas; Arantxa Palacín; César Menor-Salván; Susana Osuna-Esteban
Journal:  Orig Life Evol Biosph       Date:  2010-12-16       Impact factor: 1.950

3.  Enhanced chemical synthesis at soft interfaces: a universal reaction-adsorption mechanism in microcompartments.

Authors:  Ali Fallah-Araghi; Kamel Meguellati; Jean-Christophe Baret; Abdeslam El Harrak; Thomas Mangeat; Martin Karplus; Sylvain Ladame; Carlos M Marques; Andrew D Griffiths
Journal:  Phys Rev Lett       Date:  2014-01-13       Impact factor: 9.161

4.  Entropic contributions to rate accelerations in enzymic and intramolecular reactions and the chelate effect.

Authors:  M I Page; W P Jencks
Journal:  Proc Natl Acad Sci U S A       Date:  1971-08       Impact factor: 11.205

Review 5.  Serine octamers: cluster formation, reactions, and implications for biomolecule homochirality.

Authors:  Sergio C Nanita; R Graham Cooks
Journal:  Angew Chem Int Ed Engl       Date:  2006-01-16       Impact factor: 15.336

6.  From prelife to life: how chemical kinetics become evolutionary dynamics.

Authors:  Irene A Chen; Martin A Nowak
Journal:  Acc Chem Res       Date:  2012-02-15       Impact factor: 22.384

7.  Wet-dry cycles enable the parallel origin of canonical and non-canonical nucleosides by continuous synthesis.

Authors:  Sidney Becker; Christina Schneider; Hidenori Okamura; Antony Crisp; Tynchtyk Amatov; Milan Dejmek; Thomas Carell
Journal:  Nat Commun       Date:  2018-01-11       Impact factor: 14.919

8.  Formation of oligopeptides in high yield under simple programmable conditions.

Authors:  Marc Rodriguez-Garcia; Andrew J Surman; Geoffrey J T Cooper; Irene Suárez-Marina; Zied Hosni; Michael P Lee; Leroy Cronin
Journal:  Nat Commun       Date:  2015-10-07       Impact factor: 14.919

9.  Abiotic production of sugar phosphates and uridine ribonucleoside in aqueous microdroplets.

Authors:  Inho Nam; Jae Kyoo Lee; Hong Gil Nam; Richard N Zare
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-23       Impact factor: 11.205

10.  Prebiotic condensation through wet-dry cycling regulated by deliquescence.

Authors:  Thomas D Campbell; Rio Febrian; Jack T McCarthy; Holly E Kleinschmidt; Jay G Forsythe; Paul J Bracher
Journal:  Nat Commun       Date:  2019-10-04       Impact factor: 14.919

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  5 in total

1.  How liquid-liquid phase separation induces active spreading.

Authors:  Youchuang Chao; Olinka Ramírez-Soto; Christian Bahr; Stefan Karpitschka
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-22       Impact factor: 12.779

2.  Prebiotics and Postbiotics Synergistic Delivery Microcapsules from Microfluidics for Treating Colitis.

Authors:  Keli Yang; Xiaocheng Wang; Rongkang Huang; Hui Wang; Ping Lan; Yuanjin Zhao
Journal:  Adv Sci (Weinh)       Date:  2022-04-11       Impact factor: 17.521

3.  Evaporation of a Sessile Colloidal Water-Glycerol Droplet: Marangoni Ring Formation.

Authors:  Lijun Thayyil Raju; Christian Diddens; Yaxing Li; Alvaro Marin; Marjolein N van der Linden; Xuehua Zhang; Detlef Lohse
Journal:  Langmuir       Date:  2022-09-12       Impact factor: 4.331

4.  Evaporation Patterns of Dextran-Poly(Ethylene Glycol) Droplets with Changes in Wettability and Compatibility.

Authors:  Chiho Watanabe; Miho Yanagisawa
Journal:  Life (Basel)       Date:  2022-03-04

5.  Electrolyte-Gated Organic Field-Effect Transistors for Quantitative Monitoring of the Molecular Dynamics of Crystallization at the Solid-Liquid Interface.

Authors:  Jincheng Tong; Amadou Doumbia; Raja U Khan; Aiman Rahmanudin; Michael L Turner; Cinzia Casiraghi
Journal:  Nano Lett       Date:  2022-03-24       Impact factor: 12.262

  5 in total

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