Literature DB >> 28973868

Ab initio theory and modeling of water.

Mohan Chen1, Hsin-Yu Ko2, Richard C Remsing3,4, Marcos F Calegari Andrade2, Biswajit Santra2, Zhaoru Sun1, Annabella Selloni2, Roberto Car2,5, Michael L Klein6,3,4, John P Perdew1,3, Xifan Wu6,4.   

Abstract

Water is of the utmost importance for life and technology. However, a genuinely predictive ab initio model of water has eluded scientists. We demonstrate that a fully ab initio approach, relying on the strongly constrained and appropriately normed (SCAN) density functional, provides such a description of water. SCAN accurately describes the balance among covalent bonds, hydrogen bonds, and van der Waals interactions that dictates the structure and dynamics of liquid water. Notably, SCAN captures the density difference between water and ice Ih at ambient conditions, as well as many important structural, electronic, and dynamic properties of liquid water. These successful predictions of the versatile SCAN functional open the gates to study complex processes in aqueous phase chemistry and the interactions of water with other materials in an efficient, accurate, and predictive, ab initio manner.

Entities:  

Keywords:  ab initio theory; density functional theory; hydrogen bonding; molecular dynamics; water

Year:  2017        PMID: 28973868      PMCID: PMC5642722          DOI: 10.1073/pnas.1712499114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Generalized Gradient Approximation Made Simple.

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Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Rotational motion in liquid water is anisotropic: a nuclear magnetic resonance and molecular dynamics simulation study.

Authors:  J Ropp; C Lawrence; T C Farrar; J L Skinner
Journal:  J Am Chem Soc       Date:  2001-08-22       Impact factor: 15.419

3.  Accurate molecular van der Waals interactions from ground-state electron density and free-atom reference data.

Authors:  Alexandre Tkatchenko; Matthias Scheffler
Journal:  Phys Rev Lett       Date:  2009-02-20       Impact factor: 9.161

4.  Nuclear quantum effects and hydrogen bond fluctuations in water.

Authors:  Michele Ceriotti; Jérôme Cuny; Michele Parrinello; David E Manolopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-06       Impact factor: 11.205

5.  Isobaric-isothermal molecular dynamics simulations utilizing density functional theory: an assessment of the structure and density of water at near-ambient conditions.

Authors:  Jochen Schmidt; Joost VandeVondele; I-F William Kuo; Daniel Sebastiani; J Ilja Siepmann; Jürg Hutter; Christopher J Mundy
Journal:  J Phys Chem B       Date:  2009-09-03       Impact factor: 2.991

6.  QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials.

Authors:  Paolo Giannozzi; Stefano Baroni; Nicola Bonini; Matteo Calandra; Roberto Car; Carlo Cavazzoni; Davide Ceresoli; Guido L Chiarotti; Matteo Cococcioni; Ismaila Dabo; Andrea Dal Corso; Stefano de Gironcoli; Stefano Fabris; Guido Fratesi; Ralph Gebauer; Uwe Gerstmann; Christos Gougoussis; Anton Kokalj; Michele Lazzeri; Layla Martin-Samos; Nicola Marzari; Francesco Mauri; Riccardo Mazzarello; Stefano Paolini; Alfredo Pasquarello; Lorenzo Paulatto; Carlo Sbraccia; Sandro Scandolo; Gabriele Sclauzero; Ari P Seitsonen; Alexander Smogunov; Paolo Umari; Renata M Wentzcovitch
Journal:  J Phys Condens Matter       Date:  2009-09-01       Impact factor: 2.333

7.  Benchmark oxygen-oxygen pair-distribution function of ambient water from x-ray diffraction measurements with a wide Q-range.

Authors:  Lawrie B Skinner; Congcong Huang; Daniel Schlesinger; Lars G M Pettersson; Anders Nilsson; Chris J Benmore
Journal:  J Chem Phys       Date:  2013-02-21       Impact factor: 3.488

8.  Accurate first-principles structures and energies of diversely bonded systems from an efficient density functional.

Authors:  Jianwei Sun; Richard C Remsing; Yubo Zhang; Zhaoru Sun; Adrienn Ruzsinszky; Haowei Peng; Zenghui Yang; Arpita Paul; Umesh Waghmare; Xifan Wu; Michael L Klein; John P Perdew
Journal:  Nat Chem       Date:  2016-06-13       Impact factor: 24.427

9.  Probing the structural and dynamical properties of liquid water with models including non-local electron correlation.

Authors:  Mauro Del Ben; Jürg Hutter; Joost VandeVondele
Journal:  J Chem Phys       Date:  2015-08-07       Impact factor: 3.488

10.  Quantum Differences between Heavy and Light Water.

Authors:  A K Soper; C J Benmore
Journal:  Phys Rev Lett       Date:  2008-08-06       Impact factor: 9.161

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  32 in total

1.  Liquid water is a dynamic polydisperse branched polymer.

Authors:  Saber Naserifar; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-24       Impact factor: 11.205

2.  Absolute ion hydration free energy scale and the surface potential of water via quantum simulation.

Authors:  Yu Shi; Thomas L Beck
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-17       Impact factor: 11.205

3.  Signatures of a liquid-liquid transition in an ab initio deep neural network model for water.

Authors:  Thomas E Gartner; Linfeng Zhang; Pablo M Piaggi; Roberto Car; Athanassios Z Panagiotopoulos; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-02       Impact factor: 11.205

4.  Competing stripe and magnetic phases in the cuprates from first principles.

Authors:  Yubo Zhang; Christopher Lane; James W Furness; Bernardo Barbiellini; John P Perdew; Robert S Markiewicz; Arun Bansil; Jianwei Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-16       Impact factor: 11.205

5.  Chemical physics of water.

Authors:  Pablo G Debenedetti; Michael L Klein
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-11       Impact factor: 11.205

6.  Impact of electronic polarizability on protein-functional group interactions.

Authors:  Himanshu Goel; Wenbo Yu; Vincent D Ustach; Asaminew H Aytenfisu; Delin Sun; Alexander D MacKerell
Journal:  Phys Chem Chem Phys       Date:  2020-04-06       Impact factor: 3.676

7.  Self-interaction error overbinds water clusters but cancels in structural energy differences.

Authors:  Kamal Sharkas; Kamal Wagle; Biswajit Santra; Sharmin Akter; Rajendra R Zope; Tunna Baruah; Koblar A Jackson; John P Perdew; Juan E Peralta
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-11       Impact factor: 11.205

8.  Molecular Structure and Modeling of Water-Air and Ice-Air Interfaces Monitored by Sum-Frequency Generation.

Authors:  Fujie Tang; Tatsuhiko Ohto; Shumei Sun; Jérémy R Rouxel; Sho Imoto; Ellen H G Backus; Shaul Mukamel; Mischa Bonn; Yuki Nagata
Journal:  Chem Rev       Date:  2020-03-06       Impact factor: 60.622

Review 9.  Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities.

Authors:  Kacper Drużbicki; Mattia Gaboardi; Felix Fernandez-Alonso
Journal:  Polymers (Basel)       Date:  2021-04-29       Impact factor: 4.329

Review 10.  Enzyme Models-From Catalysis to Prodrugs.

Authors:  Zeinab Breijyeh; Rafik Karaman
Journal:  Molecules       Date:  2021-05-28       Impact factor: 4.411

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