Literature DB >> 28971260

New consensus multivariate models based on PLS and ANN studies of sigma-1 receptor antagonists.

Aline A Oliveira1,2, Célio F Lipinski1, Estevão B Pereira1, Kathia M Honorio2, Patrícia R Oliveira2, Karen C Weber3, Roseli A F Romero4, Alexsandro G de Sousa5, Albérico B F da Silva6.   

Abstract

The treatment of neuropathic pain is very complex and there are few drugs approved for this purpose. Among the studied compounds in the literature, sigma-1 receptor antagonists have shown to be promising. In order to develop QSAR studies applied to the compounds of 1-arylpyrazole derivatives, multivariate analyses have been performed in this work using partial least square (PLS) and artificial neural network (ANN) methods. A PLS model has been obtained and validated with 45 compounds in the training set and 13 compounds in the test set (r2training = 0.761, q2 = 0.656, r2test = 0.746, MSEtest = 0.132 and MAEtest = 0.258). Additionally, multi-layer perceptron ANNs (MLP-ANNs) were employed in order to propose non-linear models trained by gradient descent with momentum backpropagation function. Based on MSEtest values, the best MLP-ANN models were combined in a MLP-ANN consensus model (MLP-ANN-CM; r2test = 0.824, MSEtest = 0.088 and MAEtest = 0.197). In the end, a general consensus model (GCM) has been obtained using PLS and MLP-ANN-CM models (r2test = 0.811, MSEtest = 0.100 and MAEtest = 0.218). Besides, the selected descriptors (GGI6, Mor23m, SRW06, H7m, MLOGP, and μ) revealed important features that should be considered when one is planning new compounds of the 1-arylpyrazole class. The multivariate models proposed in this work are definitely a powerful tool for the rational drug design of new compounds for neuropathic pain treatment. Graphical abstract Main scaffold of the 1-arylpyrazole derivatives and the selected descriptors.

Entities:  

Keywords:  1-arylpyrazole; Consensus modeling; MLP-ANN; PLS; QSAR; Sigma-1 receptor

Mesh:

Substances:

Year:  2017        PMID: 28971260     DOI: 10.1007/s00894-017-3444-3

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  28 in total

1.  Safety, tolerability and pharmacokinetics of single and multiple doses of a novel sigma-1 receptor antagonist in three randomized phase I studies.

Authors:  Montserrat Abadias; Marisol Escriche; Anna Vaqué; Mariano Sust; Gregorio Encina
Journal:  Br J Clin Pharmacol       Date:  2013-01       Impact factor: 4.335

2.  Virtual computational chemistry laboratory--design and description.

Authors:  Igor V Tetko; Johann Gasteiger; Roberto Todeschini; Andrea Mauri; David Livingstone; Peter Ertl; Vladimir A Palyulin; Eugene V Radchenko; Nikolay S Zefirov; Alexander S Makarenko; Vsevolod Yu Tanchuk; Volodymyr V Prokopenko
Journal:  J Comput Aided Mol Des       Date:  2005-06       Impact factor: 3.686

3.  Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis.

Authors:  Hao Zhu; Alexander Tropsha; Denis Fourches; Alexandre Varnek; Ester Papa; Paola Gramatica; Tomas Oberg; Phuong Dao; Artem Cherkasov; Igor V Tetko
Journal:  J Chem Inf Model       Date:  2008-03-01       Impact factor: 4.956

4.  The effects of morphine- and nalorphine- like drugs in the nondependent and morphine-dependent chronic spinal dog.

Authors:  W R Martin; C G Eades; J A Thompson; R E Huppler; P E Gilbert
Journal:  J Pharmacol Exp Ther       Date:  1976-06       Impact factor: 4.030

5.  Homology Model and Docking-Based Virtual Screening for Ligands of the σ1 Receptor.

Authors:  Erik Laurini; Valentina Dal Col; Maria Grazia Mamolo; Daniele Zampieri; Paola Posocco; Maurizio Fermeglia; Luciano Vio; Sabrina Pricl
Journal:  ACS Med Chem Lett       Date:  2011-08-27       Impact factor: 4.345

6.  Topological approach to drug design.

Authors:  J Gálvez; R García-Domenech; J V de Julián-Ortiz; R Soler
Journal:  J Chem Inf Comput Sci       Date:  1995 Mar-Apr

7.  Artificial neural networks and the study of the psychoactivity of cannabinoid compounds.

Authors:  Káthia M Honório; Emmanuela F de Lima; Marcos G Quiles; Roseli A F Romero; Fábio A Molfetta; Albérico B F da Silva
Journal:  Chem Biol Drug Des       Date:  2010-06       Impact factor: 2.817

8.  Autoradiographic localization of sigma receptor binding sites in guinea pig and rat central nervous system with (+)3H-3-(3-hydroxyphenyl)-N-(1-propyl)piperidine.

Authors:  A L Gundlach; B L Largent; S H Snyder
Journal:  J Neurosci       Date:  1986-06       Impact factor: 6.167

Review 9.  Managing neuropathic pain.

Authors:  Katherine E Galluzzi
Journal:  J Am Osteopath Assoc       Date:  2007-11

Review 10.  The pharmacology of sigma-1 receptors.

Authors:  Tangui Maurice; Tsung-Ping Su
Journal:  Pharmacol Ther       Date:  2009-07-18       Impact factor: 12.310

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Authors:  Marta Sá; Narcis Ferrer-Ledo; Fengzheng Gao; Carlo G Bertinetto; Jeroen Jansen; João G Crespo; Rene H Wijffels; Maria Barbosa; Claudia F Galinha
Journal:  Microb Biotechnol       Date:  2022-02-17       Impact factor: 6.575

  1 in total

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