Literature DB >> 28964526

piRNA Biogenesis in Drosophila melanogaster.

Xiawei Huang1, Katalin Fejes Tóth2, Alexei A Aravin3.   

Abstract

The PIWI-interacting RNA (piRNA) pathway is a conserved defense system that protects the genome integrity of the animal germline from deleterious transposable elements. Targets of silencing are recognized by small noncoding piRNAs that are processed from long precursor molecules. Although piRNAs and other classes of small noncoding RNAs, such as miRNAs and small interfering (si)RNAs, interact with members of the same family of Argonaute (Ago) proteins and their function in target repression is similar, the biogenesis of piRNAs differs from those of the other two small RNAs. Recently, many aspects of piRNA biogenesis have been revealed in Drosophila melanogaster. In this review, we elaborate on piRNA biogenesis in Drosophila somatic and germline cells. We focus on the mechanisms by which piRNA precursor transcription is regulated and highlight recent work that has advanced our understanding of piRNA precursor processing to mature piRNAs. We finish by discussing current models to the still unresolved question of how piRNA precursors are selected and channeled into the processing machinery.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28964526      PMCID: PMC5773129          DOI: 10.1016/j.tig.2017.09.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  118 in total

Review 1.  The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis.

Authors:  Michelle A Carmell; Zhenyu Xuan; Michael Q Zhang; Gregory J Hannon
Journal:  Genes Dev       Date:  2002-11-01       Impact factor: 11.361

2.  Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage.

Authors:  Yu-Ren Yuan; Yi Pei; Jin-Biao Ma; Vitaly Kuryavyi; Maria Zhadina; Gunter Meister; Hong-Ying Chen; Zbigniew Dauter; Thomas Tuschl; Dinshaw J Patel
Journal:  Mol Cell       Date:  2005-08-05       Impact factor: 17.970

3.  Yb integrates piRNA intermediates and processing factors into perinuclear bodies to enhance piRISC assembly.

Authors:  Yukiko Murota; Hirotsugu Ishizu; Shinichi Nakagawa; Yuka W Iwasaki; Shinsuke Shibata; Miharu K Kamatani; Kuniaki Saito; Hideyuki Okano; Haruhiko Siomi; Mikiko C Siomi
Journal:  Cell Rep       Date:  2014-06-19       Impact factor: 9.423

4.  A broadly conserved pathway generates 3'UTR-directed primary piRNAs.

Authors:  Nicolas Robine; Nelson C Lau; Sudha Balla; Zhigang Jin; Katsutomo Okamura; Satomi Kuramochi-Miyagawa; Michael D Blower; Eric C Lai
Journal:  Curr Biol       Date:  2009-12-29       Impact factor: 10.834

5.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

6.  Multiple roles for Piwi in silencing Drosophila transposons.

Authors:  Nikolay V Rozhkov; Molly Hammell; Gregory J Hannon
Journal:  Genes Dev       Date:  2013-02-07       Impact factor: 11.361

7.  Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors.

Authors:  Yung-Chia Ariel Chen; Evelyn Stuwe; Yicheng Luo; Maria Ninova; Adrien Le Thomas; Ekaterina Rozhavskaya; Sisi Li; Sivani Vempati; John D Laver; Dinshaw J Patel; Craig A Smibert; Howard D Lipshitz; Katalin Fejes Toth; Alexei A Aravin
Journal:  Mol Cell       Date:  2016-06-09       Impact factor: 17.970

8.  De novo piRNA cluster formation in the Drosophila germ line triggered by transgenes containing a transcribed transposon fragment.

Authors:  Ivan Olovnikov; Sergei Ryazansky; Sergey Shpiz; Sergey Lavrov; Yuri Abramov; Chantal Vaury; Silke Jensen; Alla Kalmykova
Journal:  Nucleic Acids Res       Date:  2013-04-24       Impact factor: 16.971

9.  Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in Drosophila.

Authors:  Andrea L Zamparini; Marie Y Davis; Colin D Malone; Eric Vieira; Jiri Zavadil; Ravi Sachidanandam; Gregory J Hannon; Ruth Lehmann
Journal:  Development       Date:  2011-08-10       Impact factor: 6.868

10.  Antagonistic roles of Nibbler and Hen1 in modulating piRNA 3' ends in Drosophila.

Authors:  Hui Wang; Zaijun Ma; Kongyan Niu; Yi Xiao; Xiaofen Wu; Chenyu Pan; Yun Zhao; Kai Wang; Yaoyang Zhang; Nan Liu
Journal:  Development       Date:  2015-12-30       Impact factor: 6.868

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  52 in total

1.  Acetyltransferase Enok regulates transposon silencing and piRNA cluster transcription.

Authors:  Shih-Ying Tsai; Fu Huang
Journal:  PLoS Genet       Date:  2021-02-01       Impact factor: 5.917

2.  P Granules Protect RNA Interference Genes from Silencing by piRNAs.

Authors:  John Paul T Ouyang; Andrew Folkmann; Lauren Bernard; Chih-Yung Lee; Uri Seroussi; Amanda G Charlesworth; Julie M Claycomb; Geraldine Seydoux
Journal:  Dev Cell       Date:  2019-08-08       Impact factor: 12.270

3.  Evolutionary Dynamics of the Pericentromeric Heterochromatin in Drosophila virilis and Related Species.

Authors:  Alexander P Rezvykh; Sergei Yu Funikov; Lyudmila A Protsenko; Dina A Kulikova; Elena S Zelentsova; Lyubov N Chuvakova; Justin P Blumenstiel; Michael B Evgen'ev
Journal:  Genes (Basel)       Date:  2021-01-27       Impact factor: 4.096

4.  Terminal modification, sequence, length, and PIWI-protein identity determine piRNA stability.

Authors:  Ildar Gainetdinov; Cansu Colpan; Katharine Cecchini; Amena Arif; Karina Jouravleva; Paul Albosta; Joel Vega-Badillo; Yongjin Lee; Deniz M Özata; Phillip D Zamore
Journal:  Mol Cell       Date:  2021-10-08       Impact factor: 17.970

Review 5.  PiRNA pathway in the cardiovascular system: a novel regulator of cardiac differentiation, repair and regeneration.

Authors:  Yuling Zhou; Ya Fang; Cuilian Dai; Yan Wang
Journal:  J Mol Med (Berl)       Date:  2021-09-17       Impact factor: 4.599

6.  Structure-function analysis of microRNA 3'-end trimming by Nibbler.

Authors:  Wei Xie; Ivica Sowemimo; Rippei Hayashi; Juncheng Wang; Thomas R Burkard; Julius Brennecke; Stefan L Ameres; Dinshaw J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-16       Impact factor: 11.205

7.  The RNA-Binding ATPase, Armitage, Couples piRNA Amplification in Nuage to Phased piRNA Production on Mitochondria.

Authors:  Daniel Tianfang Ge; Wei Wang; Cindy Tipping; Ildar Gainetdinov; Zhiping Weng; Phillip D Zamore
Journal:  Mol Cell       Date:  2019-05-07       Impact factor: 17.970

Review 8.  Intergenerational and transgenerational epigenetic inheritance in animals.

Authors:  Marcos Francisco Perez; Ben Lehner
Journal:  Nat Cell Biol       Date:  2019-01-02       Impact factor: 28.824

9.  Evolution of plasticity in production and transgenerational inheritance of small RNAs under dynamic environmental conditions.

Authors:  Willian T A F Silva; Sarah P Otto; Simone Immler
Journal:  PLoS Genet       Date:  2021-05-26       Impact factor: 5.917

10.  Binding of guide piRNA triggers methylation of the unstructured N-terminal region of Aub leading to assembly of the piRNA amplification complex.

Authors:  Xiawei Huang; Hongmiao Hu; Alexandre Webster; Fan Zou; Jiamu Du; Dinshaw J Patel; Ravi Sachidanandam; Katalin Fejes Toth; Alexei A Aravin; Sisi Li
Journal:  Nat Commun       Date:  2021-07-01       Impact factor: 14.919

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