| Literature DB >> 28961261 |
Jiunn-Diann Lin1,2,3, Shun-Fa Yang4,5, Yuan-Hung Wang1,6, Wen-Fang Fang7, Ying-Chin Lin7, Bing-Chun Liou1, Yuh-Feng Lin1,8, Kam-Tsun Tang9, Chao-Wen Cheng1.
Abstract
BACKGROUND: Melatonin plays an important role in immunity and has been linked to autoimmune diseases. Possible associations of single-nucleotide polymorphisms (SNPs) of melatonin receptor type 1A (MTNR1A) and 1B (MTNR1B), with autoimmune thyroid disease in an ethnic Chinese (i.e., Taiwanese) population were examined.Entities:
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Year: 2017 PMID: 28961261 PMCID: PMC5621676 DOI: 10.1371/journal.pone.0185529
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Pairwise linkage disequilibrium patterns of melatonin receptor type 1A (panel A) and type 1B (panel B).
Genotypic and allelic frequencies of rs13140012, rs6553010, and rs2119882 in the melatonin receptor type 1A gene.
| Polymorphism | Control | GD | HT | AITD | OR1 (95% CI) | OR2 (95% CI) | OR3 (95% CI) |
|---|---|---|---|---|---|---|---|
| rs6553010 | |||||||
| AA | 159 (45.3) | 162 (50.9) | 30 (36.1) | 192 (47.8) | 1 | 1 | 1 |
| AG | 149 (42.5) | 120 (31.7) | 39 (47.0) | 159 (39.7) | 0.79 (0.57~1.09) | 1.39 (0.82~2.35) | 0.83 (0.65~1.20) |
| GG | 43 (12.3) | 36 (11.3) | 14 (16.9) | 50 (12.5) | 0.82 (0.50~1.35) | 2.34 (0.24~22.7) | 0.96 (0.61~1.52) |
| AG+GG | 192 (54.8) | 156 (43.0) | 53 (63.9) | 209 (52.2) | 0.80 (0.59~1.08) | 1.46 (0.89~2.40) | 0.90 (0.68~1.20) |
| Allele | |||||||
| A | 467 (66.5) | 444 (69.8) | 99 (60.7) | 543 (67.7) | 1 | 1 | 1 |
| G | 235 (33.5) | 192 (30.2) | 67 (39.3) | 259 (32.3) | 0.86 (0.68~1.08) | 1.35 (0.95~1.90) | 0.95 (0.76~1.18) |
| rs13140012 | |||||||
| AA | 140 (39.9) | 149 (46.9) | 26 (31.3) | 175 (43.6) | 1 | 1 | 1 |
| AT | 165 (47.0) | 136 (42.8) | 46 (55.4) | 182 (45.4) | 0.77 (0.56~1.07) | 1.50 (0.88~2.55) | 0.88 (0.65~1.20) |
| TT | 46 (13.1) | 33 (10.4) | 11 (13.3) | 44 (11.0) | 0.67 (0.41~1.12) | 1.29 (0.59~1.81) | 0.73 (0.46~1.17) |
| AT+TT | 201 (60.1) | 169 (53.2) | 57 (68.7) | 216 (56.4) | 0.75 (0.55~1.02) | 1.46 (0.87~2.42) | 0.85 (0.64~1.14) |
| Allele | |||||||
| A | 445 (63.4) | 434 (68.2) | 98 (59.0) | 532 (66.3) | 1 | 1 | 1 |
| T | 257 (36.6) | 202 (31.8) | 68 (41.0) | 270 (33.7) | 0.81 (0.64~1.01) | 1.20 (0.85~1.70) | 0.87 (0.70~1.07) |
| rs2119882 | |||||||
| TT | 140 (39.9) | 153 (48.1) | 28 (33.7) | 181 (45.1) | 1 | 1 | 1 |
| CT | 166 (47.3) | 132 (41.5) | 43 (51.8) | 175 (43.6) | 0.73 (0.53~1.01) | 1.30 (0.77~2.19) | 0.82 (0.60~1.11) |
| CC | 45 (12.8) | 33 (10.4) | 12 (14.5) | 45 (11.2) | 0.67 (0.41~1.11) | 1.33 (0.63~2.84) | 0.77 (0.48~1.24) |
| CC+CT | 211 (60.1) | 165 (51.9) | 55 (66.3) | 220 (54.8) | 0.72(0.53~0.97 | 1.30 (0.79~2.76) | 0.81 (0.60~1.08) |
| Allele | |||||||
| T | 446 (63.5) | 438 (68.9) | 99 (60.7) | 537 (67.0) | 1 | 1 | 1 |
| C | 256 (36.5) | 198 (31.1) | 67 (39.3) | 265 (33.0) | 0.79(0.63~0.99 | 1.18 (0.83~1.67) | 0.86 (0.70~1.06) |
GD, Graves’ disease; HT, Hashimoto’s thyroiditis; AITD, autoimmune thyroid disease (GD + HT); control, control group. OR1, odds ratio 1, GD vs. the control; OR2, odds ratio 2, HT vs. the control; OR3, odds ratio 3, AITD vs. the control; CI, confidence interval
* p<0.05.
Genotypic and allelic frequencies of rs1387153, rs10830963, and rs1562444 in the melatonin receptor type 1B gene.
| Polymorphism | Control | GD | HT | AITD | OR1 (95% CI) | OR2 (95% CI) | OR3 (95% CI) |
|---|---|---|---|---|---|---|---|
| rs1387153 | |||||||
| CC | 101 (33.8) | 93 (30.7) | 27 (32.9) | 120 (31.2) | 1 | 1 | 1 |
| CT | 137 (45.8) | 149 (49.2) | 43 (52.4) | 192 (49.9) | 1.18 (0.82~1.70) | 1.17 (0.68~2.03) | 1.18 (0.84~1.66) |
| TT | 61 (20.4) | 61 (20.1) | 12 (14.6) | 73 (18.9) | 1.09 (0.69~1.71) | 0.74 (0.35~1.56) | 1.01 (0.66~1.55) |
| CT+TT | 198 (66.2) | 156 (69.3) | 55 (67.0) | 265 (68.8) | 1.15 (0.82~1.62) | 1.04 (0.62~1.75) | 1.13 (0.82~1.56) |
| Allele | |||||||
| C | 339 (56.7) | 335 (55.3) | 97 (59.1) | 432 (56.1) | 1 | 1 | 1 |
| T | 259 (43.3) | 271 (44.7) | 67 (40.9) | 338 (43.9) | 1.06 (0.84~1.33) | 0.90 (0.64~1.28) | 1.02 (0.83~1.27) |
| rs10830963 | |||||||
| CC | 96 (32.1) | 91 (30.0) | 25 (30.4) | 116 (30.1) | 1 | 1 | 1 |
| CG | 147 (49.2) | 143 (47.2) | 44 (53.7) | 187 (48.6) | 1.03 (0.71~1.48) | 1.15 (0.66~2.00) | 1.05 (0.75~1.49) |
| GG | 56 (18.7) | 69 (22.8) | 13 (15.9) | 82 (21.3) | 1.30 (0.83~2.05) | 0.89 (0.42~1.88) | 1.21 (0.79~1.87) |
| CG+GG | 203 (77.9) | 169 (70.0) | 57 (69.6) | 269 (69.9) | 1.10 (0.78~1.56) | 1.08 (0.64~1.83) | 1.10 (0.79~1.52) |
| Allele | |||||||
| C | 339 (56.7) | 325 (53.6) | 94 (57.3) | 419 (54.4) | 1 | 1 | 1 |
| G | 259 (43.3) | 281 (46.4) | 70 (42.7) | 351 (45.6) | 1.13 (0.90~1.42) | 0.98 (0.69~1.38) | 1.10 (0.88~1.36) |
| rs1562444 | |||||||
| AA | 133 (44.5) | 139 (45.9) | 38 (46.3) | 177 (46.0) | 1 | 1 | 1 |
| AG | 132 (44.1) | 131 (43.2) | 40 (48.8) | 171 (44.4) | 0.95 (0.68~1.33) | 1.06 (0.64~1.76) | 0.97 (0.71~1.34) |
| GG | 34 (11.4) | 33 (10.9) | 4 (4.9) | 37 (9.6) | 0.93 (0.54~1.59) | 0.41 (0.14~1.23) | 0.82 (0.49~1.37) |
| AG+GG | 166 (55.5) | 164 (54.1) | 44 (53.7) | 208 (54.0) | 0.95 (0.69~1.30) | 0.93 (0.57~1.52) | 0.94 (0.70~1.28) |
| Allele | |||||||
| A | 398 (66.6) | 409 (67.5) | 116 (70.7) | 525 (68.2) | 1 | 1 | 1 |
| G | 200 (33.4) | 197 (32.5) | 48 (29.3) | 245 (31.8) | 0.96 (0.75~1.22) | 0.82 (0.57~1.30) | 0.93 (0.74~1.17) |
GD, Graves’ disease; HT, Hashimoto’s thyroiditis; AITD, autoimmune thyroid disease (GD + HT); control, control group. OR1, odds ratio 1, GD vs. the control; OR2, odds ratio 2, HT vs. the control; OR3, odds ratio 3, AITD vs. the control; CI, confidence interval.
Combined haplotype frequencies of rs13140012 and rs2119882 in Graves’ disease (GD) and in controls.
| Total | GD (318) | Control (351) | OR (95% CI) | |
|---|---|---|---|---|
| AT | 0.649 | 0.580 | 1.34 (1.07~1.67) | 0.010 |
| TC | 0.278 | 0.311 | 0.85 (0.67~1.08) | 0.182 |
| TT | 0.040 | 0.055 | 0.68 (0.40~1.13) | 0.194 |
| AC | 0.033 | 0.053 | 0.60 (0.35~1.03) | 0.074 |
OR, odds ratio; CI, confidence interval.
Fig 2Anti-thyroid peroxidase antibody (anti-TPO Ab) titers at the baseline in different genotypes of rs6553010, rs13140012, and rs2119882, and the combined genotype of rs13140012 and rs2119882 in patients with Graves’ disease.
Low anti-TPO, low anti-TPO Ab titer (≤1:1600); high anti-TPO, high anti-TPO Ab titer (1:6400~1:25,600 and >1:25,600); the number in the column indicates the frequency of the genotype.
Multivariate logistic regression analysis to predict the development of Graves’ disease (GD).
| Genetic variant | Smoking | FH | |
|---|---|---|---|
| AOR (95% CI) | AOR (95% CI) | AOR (95% CI) | |
| rs6553010 | |||
| AA | 1 | 1.84 (1.20~2.81) | 5.74 (3.50~9.42) |
| AG+GG | 0.70 (0.50~0.97) | ||
| rs13140012 | |||
| AA | 1 | 1.81 (1.19~2.77) | 5.66 (3.45~9.29) |
| AT+TT | 0.70 (0.49~0.96) | ||
| rs2119882 | |||
| TT | 1 | 1.79(1.17~2.75) | 5.62(3.43~9.22) |
| TC+CC | 0.67 (0.48~0.93) | ||
| rs13140012/rs2119882 | |||
| AATT | 1 | 1.81 (1.18~2.76) | 5.76 (3.51~9.47) |
| Non AATT | 0.61 (0.43~0.85) |
* p < 0.05; AOR, adjusted odds ratio; CI, confidence interval; FH, family history of thyroid disease.