Literature DB >> 28960539

Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016).

Andriy Kryshtafovych1, Reinhard Albrecht2, Arnaud Baslé3, Pedro Bule4, Alessandro T Caputo5, Ana Luisa Carvalho6, Kinlin L Chao7, Ron Diskin8, Krzysztof Fidelis1, Carlos M G A Fontes4, Folmer Fredslund9, Harry J Gilbert3, Celia W Goulding10, Marcus D Hartmann2, Christopher S Hayes11, Osnat Herzberg7,12, Johan C Hill5, Andrzej Joachimiak13,14, Gert-Wieland Kohring15, Roman I Koning16,17, Leila Lo Leggio9, Marco Mangiagalli18, Karolina Michalska13, John Moult19, Shabir Najmudin4, Marco Nardini20, Valentina Nardone20, Didier Ndeh3, Thanh-Hong Nguyen21, Guido Pintacuda22, Sandra Postel23, Mark J van Raaij21, Pietro Roversi5,24, Amir Shimon8, Abhimanyu K Singh25, Eric J Sundberg26, Kaspars Tars27,28, Nicole Zitzmann5, Torsten Schwede29.   

Abstract

The functional and biological significance of the selected CASP12 targets are described by the authors of the structures. The crystallographers discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP12 experiment.
© 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  CASP; NMR; X-ray crystallography; protein structure prediction

Mesh：

Substances：

Year:  2017        PMID： 28960539      PMCID： PMC5820184          DOI： 10.1002/prot.25392

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


  117 in total

1.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

Review 2.  Structure, function and evolution of multidomain proteins.

Authors:  Christine Vogel; Matthew Bashton; Nicola D Kerrison; Cyrus Chothia; Sarah A Teichmann
Journal:  Curr Opin Struct Biol       Date:  2004-04       Impact factor: 6.809

Review 3.  The coming of age of virus-like particle vaccines.

Authors:  Gary T Jennings; Martin F Bachmann
Journal:  Biol Chem       Date:  2008-05       Impact factor: 3.915

Review 4.  Ice-Binding Proteins and Their Function.

Authors:  Maya Bar Dolev; Ido Braslavsky; Peter L Davies
Journal:  Annu Rev Biochem       Date:  2016-04-25       Impact factor: 23.643

5.  The Pseudomonas aeruginosa flagellar cap protein, FliD, is responsible for mucin adhesion.

Authors:  S K Arora; B W Ritchings; E C Almira; S Lory; R Ramphal
Journal:  Infect Immun       Date:  1998-03       Impact factor: 3.441

6.  Isolation and characterization of Whitewater Arroyo virus, a novel North American arenavirus.

Authors:  C F Fulhorst; M D Bowen; T G Ksiazek; P E Rollin; S T Nichol; M Y Kosoy; C J Peters
Journal:  Virology       Date:  1996-10-01       Impact factor: 3.616

7.  Members of a novel gene family, Gsdm, are expressed exclusively in the epithelium of the skin and gastrointestinal tract in a highly tissue-specific manner.

Authors:  Masaru Tamura; Shigekazu Tanaka; Tomoaki Fujii; Aya Aoki; Hiromitu Komiyama; Kiyoshi Ezawa; Kenta Sumiyama; Tomoko Sagai; Toshihiko Shiroishi
Journal:  Genomics       Date:  2007-03-12       Impact factor: 5.736

8.  Divergence of quaternary structures among bacterial flagellar filaments.

Authors:  Vitold E Galkin; Xiong Yu; Jakub Bielnicki; John Heuser; Cheryl P Ewing; Patricia Guerry; Edward H Egelman
Journal:  Science       Date:  2008-04-18       Impact factor: 47.728

9.  Novel dimeric β-helical model of an ice nucleation protein with bridged active sites.

Authors:  Christopher P Garnham; Robert L Campbell; Virginia K Walker; Peter L Davies
Journal:  BMC Struct Biol       Date:  2011-09-27

10.  Genetic association analyses of atopic illness and proinflammatory cytokine genes with type 1 diabetes.

Authors:  Nada M Saleh; Srilakshmi M Raj; Deborah J Smyth; Chris Wallace; Joanna M M Howson; Louise Bell; Neil M Walker; Helen E Stevens; John A Todd
Journal:  Diabetes Metab Res Rev       Date:  2011-11       Impact factor: 4.876
View more
  5 in total

1.  Critical assessment of methods of protein structure prediction (CASP)-Round XII.

Authors:  John Moult; Krzysztof Fidelis; Andriy Kryshtafovych; Torsten Schwede; Anna Tramontano
Journal:  Proteins       Date:  2017-12-15

2.  Flexible Backbone Assembly and Refinement of Symmetrical Homomeric Complexes.

Authors:  Shourya S Roy Burman; Remy A Yovanno; Jeffrey J Gray
Journal:  Structure       Date:  2019-04-18       Impact factor: 5.006

3.  Cryptic Genes for Interbacterial Antagonism Distinguish Rickettsia Species Infecting Blacklegged Ticks From Other Rickettsia Pathogens.

Authors:  Victoria I Verhoeve; Tyesha D Fauntleroy; Riley G Risteen; Timothy P Driscoll; Joseph J Gillespie
Journal:  Front Cell Infect Microbiol       Date:  2022-05-03       Impact factor: 6.073

4.  Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase.

Authors:  Carlos P Modenutti; Juan I Blanco Capurro; Roberta Ibba; Dominic S Alonzi; Mauro N Song; Snežana Vasiljević; Abhinav Kumar; Anu V Chandran; Gabor Tax; Lucia Marti; Johan C Hill; Andrea Lia; Mario Hensen; Thomas Waksman; Jonathan Rushton; Simone Rubichi; Angelo Santino; Marcelo A Martí; Nicole Zitzmann; Pietro Roversi
Journal:  Structure       Date:  2020-12-21       Impact factor: 5.006

5.  Target highlights in CASP14: Analysis of models by structure providers.

Authors:  Leila T Alexander; Rosalba Lepore; Andriy Kryshtafovych; Athanassios Adamopoulos; Markus Alahuhta; Ann M Arvin; Yannick J Bomble; Bettina Böttcher; Cécile Breyton; Valerio Chiarini; Naga Babu Chinnam; Wah Chiu; Krzysztof Fidelis; Rhys Grinter; Gagan D Gupta; Marcus D Hartmann; Christopher S Hayes; Tatjana Heidebrecht; Andrea Ilari; Andrzej Joachimiak; Youngchang Kim; Romain Linares; Andrew L Lovering; Vladimir V Lunin; Andrei N Lupas; Cihan Makbul; Karolina Michalska; John Moult; Prasun K Mukherjee; William Sam Nutt; Stefan L Oliver; Anastassis Perrakis; Lucy Stols; John A Tainer; Maya Topf; Susan E Tsutakawa; Mauricio Valdivia-Delgado; Torsten Schwede
Journal:  Proteins       Date:  2021-10-10
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.