| Literature DB >> 28959622 |
Kenneth T Bogen1, Lora L Arnold2, Aparajita Chowdhury3, Karen L Pennington2, Samuel M Cohen2,4.
Abstract
The in vitro arsenite (AsIII) cytotoxicity dose-response (DR) of human keratinocytes (HEK001) was examined at greater statistical resolution than ever previously reported using the MTT assay to determine cell viability. Fifty-four 96-well plates were treated with AsIII concentrations of 0.25, 0.5, 1, 2, 3, 4, 5, 7, 10, 15, 20, 25, or 30 μM. Because of unexpected variation in viability response patterns, a two-stage DR analysis was used in which data on plate-specific viability (%), estimated as 100% times the ratio of measured viability in exposed to unexposed cells, were fit initially to a generalized lognormal response function positing that HEK001 cells studied consisted of: a proportion P of relatively highly sensitive (HS) cells, a proportion Po of relatively resistant cells, and a remaining (1-P-Po) fraction of typical-sensitivity (TS) cells exhibiting the intermediate level of AsIII sensitivity characteristic of most cells in each assay. The estimated fractions P and Po were used to adjust data from all 54 plates (and from the 28 plates yielding the best fits) to reflect the condition that P = Po = 0 to provide detailed DR analysis specifically for TS cells. Four DR models fit to the combined adjusted data were each very predictive (R2 > 0.97) overall but were inconsistent with at least one of the data set examined (p < 10-5). Adjusted mean responses at ≤3 μM were approximately equal (p > 0.30) and exceeded 100% significance (p ≤ 10-6). A low-dose hormetic model provided the best fit to the combined adjusted data for TS cells (R2 = 0.995). Marked variability in estimates of P (the proportion of apparent HS cells) was unexpected, not readily explained, and warrants further study using additional cell lines and assay methods, and in vivo.Entities:
Keywords: Arsenate; Arsenic; Cell culture; Cell death; Cytotoxicity; HEK001 cells
Year: 2016 PMID: 28959622 PMCID: PMC5615095 DOI: 10.1016/j.toxrep.2016.12.003
Source DB: PubMed Journal: Toxicol Rep ISSN: 2214-7500
LNS model fits to plate-specific viability data and related statistics.a, c
| Plate ( | Nx | Np | P | Po | GM (μM) | GSD | R2 | pfit,adj | ||
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | 14 | 7 | 0.027 | 0.094 | 89.2 | 18.3 | 1.15 | 0.958 | 0.995 |
| 2 | 1 | 14 | 1 | 0 | 0 | 118. | 17.9 | 1.53 | 0.950 | 0.995 |
| 3 | 1 | 14 | 2 | 0.095 | 0.085 | 7.46 | 19.5 | 1.24 | 0.972 | 0.995 |
| 4 | 1 | 14 | 2 | 0.101 | 0.092 | 8.76 | 19.8 | 1.28 | 0.976 | 0.995 |
| 5 | 2 | 16 | 1 | 0 | 0 | 113. | 17.2 | 1.53 | 0.881 | 0.995 |
| 6 | 2 | 16 | 4 | 0.019 | 0.051 | 93.4 | 16.6 | 1.28 | 0.968 | 0.995 |
| 7 | 2 | 16 | 1 | 0 | 0.095 | 102. | 21.4 | 1.20 | 0.867 | 0.995 |
| 8 | 2 | 16 | 1 | 0 | 0.056 | 61.7 | 18.8 | 1.33 | 0.791 | 0.995 |
| 9 | 2 | 16 | 1 | 0 | 0.070 | 101. | 16.2 | 1.34 | 0.891 | 0.995 |
| 10 | 3 | 18 | 3 | 0.106 | 0.024 | 85.8 | 13.4 | 1.40 | 0.983 | 0.995 |
| 11 | 3 | 18 | 1 | 0.034 | 0.021 | 74.3 | 11.2 | 1.45 | 0.970 | 0.995 |
| 12 | 3 | 18 | 1 | 0.142 | 0.015 | 98.7 | 12.6 | 1.47 | 0.975 | <10−7 |
| 13 | 4 | 18 | 2 | 0.277 | 0.050 | 8.93 | 15.1 | 1.46 | 0.937 | ∼0 |
| 14 | 4 | 18 | 4 | 0.359 | 0.045 | 4.26 | 15.9 | 1.34 | 0.965 | 0.995 |
| 15 | 4 | 18 | 9 | 0.418 | 0 | 0.419 | 17.6 | 1.53 | 0.940 | 0.061 |
| 16 | 4 | 18 | 3 | 0.284 | 0 | 4.54 | 17.5 | 1.50 | 0.931 | 0.665 |
| 17 | 4 | 18 | 4 | 0.250 | 0.028 | 3.14 | 14.9 | 1.58 | 0.959 | 0.995 |
| 18 | 4 | 18 | 6 | 0.330 | 0.058 | 1.44 | 17.4 | 1.27 | 0.935 | 0.684 |
| 19 | 5 | 19 | 2 | 0.192 | 0 | 8.54 | 13.6 | 1.53 | 0.963 | 0.995 |
| 20 | 5 | 19 | 2 | 0.200 | 0.023 | 7.95 | 12.8 | 1.53 | 0.940 | 0.435 |
| 21 | 5 | 19 | 1 | 0.105 | 0.035 | 108. | 13.0 | 1.40 | 0.951 | <10−4 |
| 22 | 5 | 19 | 3 | 0.214 | 0.032 | 7.53 | 16.1 | 1.29 | 0.829 | <10−4 |
| 23 | 5 | 19 | 2 | 0.215 | 0.026 | 9.06 | 14.2 | 1.39 | 0.909 | 10−8 |
| 24 | 5 | 19 | 2 | 0.225 | 0.024 | 9.73 | 14.6 | 1.45 | 0.853 | 0.995 |
| 25 | 6 | 6 | 3 | 0.103 | 0.041 | 104. | 14.5 | 1.43 | 0.953 | 10−5 |
| 26 | 6 | 6 | 3 | 0.162 | 0.092 | 4.85 | 18.5 | 1.46 | 0.907 | 0.995 |
| 27 | 6 | 6 | 1 | 0.011 | 0 | 106. | 18.0 | 1.42 | 0.904 | 0.995 |
| 28 | 6 | 6 | 3 | 0.085 | 0.085 | 5.51 | 17.7 | 1.37 | 0.914 | 0.995 |
| 29 | 6 | 6 | 2 | 0.179 | 0 | 8.55 | 17.8 | 1.46 | 0.957 | 0.995 |
| 30 | 6 | 6 | 7 | 0.293 | 0.119 | 9.69 | 19.9 | 1.04 | 0.793 | 0.115 |
| 31 | 7 | 8 | 4 | 0.275 | 0.013 | 3.28 | 20.7 | 1.52 | 0.851 | 0.995 |
| 32 | 7 | 8 | 8 | 0.318 | 0.114 | 0.883 | 22.2 | 1.12 | 0.953 | 0.995 |
| 33 | 7 | 8 | 2 | 0.269 | 0.056 | 16.7 | 20.1 | 1.35 | 0.926 | 0.995 |
| 34 | 7 | 8 | 2 | 0.258 | 0 | 8.79 | 15.1 | 1.72 | 0.818 | 0.995 |
| 35 | 7 | 8 | 9 | 0.209 | 0 | 0.434 | 22.6 | 1.44 | 0.895 | 0.995 |
| 36 | 7 | 8 | 10 | 0.291 | 0.123 | 0.416 | 23.5 | 1.01 | 0.949 | 0.995 |
| 37 | 7 | 8 | 4 | 0.269 | 0 | 101. | 22.1 | 1.42 | 0.807 | 0.995 |
| 38 | 7 | 8 | 2 | 0.372 | 0 | 17.1 | 18.8 | 1.47 | 0.849 | 0.995 |
| 39 | 7 | 8 | 2 | 0.067 | 0.113 | 8.45 | 13.7 | 1.77 | 0.933 | 0.995 |
| 40 | 7 | 8 | 3 | 0.317 | 0.085 | 5.84 | 21.5 | 1.17 | 0.790 | 0.995 |
| 41 | 7 | 8 | 1 | 0 | 0 | 99.8 | 17.4 | 1.69 | 0.827 | 0.995 |
| 42 | 7 | 8 | 1 | 0.037 | 0 | 8.97 | 16.5 | 1.85 | 0.847 | 0.995 |
| 43 | 8 | 9 | 2 | 0.174 | 0 | 13.0 | 21.7 | 1.47 | 0.880 | 0.995 |
| 44 | 8 | 9 | 2 | 0.165 | 0 | 7.36 | 17.6 | 1.56 | 0.946 | 0.995 |
| 45 | 8 | 9 | 3 | 0.135 | 0.160 | 4.72 | 20.6 | 1.21 | 0.909 | 0.995 |
| 46 | 8 | 9 | 5 | 0.291 | 0 | 1.55 | 19.8 | 1.53 | 0.966 | 0.995 |
| 47 | 8 | 9 | 2 | 0.107 | 0.126 | 7.43 | 20.8 | 1.22 | 0.937 | 0.995 |
| 48 | 8 | 9 | 1 | 0.215 | 0.073 | 18.21 | 19.6 | 1.35 | 0.929 | 0.995 |
| 49 | 8 | 9 | 1 | 0.239 | 0.092 | 16.7 | 19.6 | 1.37 | 0.946 | 0.995 |
| 50 | 8 | 9 | 7 | 0.178 | 0.117 | 18.8 | 20.4 | 1.27 | 0.966 | 0.995 |
| 51 | 8 | 9 | 7 | 0.261 | 0.112 | 28.7 | 21.2 | 1.13 | 0.896 | 0.995 |
| 52 | 8 | 9 | 4 | 0.142 | 0 | 83.7 | 20.5 | 1.54 | 0.949 | 0.995 |
| 53 | 8 | 9 | 3 | 0.207 | 0.123 | 7.76 | 20.7 | 1.17 | 0.941 | 0.995 |
| 54 | 8 | 9 | 3 | 0.079 | 0.040 | 43.0 | 18.8 | 1.43 | 0.963 | 0.995 |
| AM | All | – | – | 0.172 | 0.0483 | 35.0 | 17.9 | 1.40 | 0.915 | 0.829 |
| SD | All | – | – | 0.113 | 0.0462 | 41.4 | 2.97 | 0.173 | 0.0546 | 0.353 |
| SEM | All | – | – | 0.015 | 0.0063 | 5.64 | 0.404 | 0.0236 | 0.0074 | 0.048 |
| AM | – | – | – | 0.151 | 0.0511 | 35.1 | 16.9 | 1.41 | 0.952 | 0.821 |
| SD | – | – | – | 0.091 | 0.0419 | 41.2 | 2.94 | 0.138 | 0.0172 | 0.362 |
| SEM | – | – | – | 0.017 | 0.0079 | 7.76 | 0.555 | 0.0261 | 0.0033 | 0.068 |
LNS model variables (see Methods); those labeled without units are unitless; rational-valued entries listed are shown rounded to three significant digits. Nx = experiment #; Np = # cell-culture passages for cells used in this experiment; i = initial index of concentrations C (1 ≤ i ≤ 13) modeled for experiment j when data were subsequently combined over multiple experiments using Eq. (2) (see Methods, Results); R2 = squared coefficient of correlation (fraction of variance explained by regression); pfit,adj = p-value of chi-square goodness of fit test adjusted for n = 54 independent tests (values ≤10−10 are listed as ∼0); AM = arithmetic mean; SD = standard deviation; SEM = standard error of the mean; − = not applicable.
Summary statistics for the subset of 28 “best-fit” plates (Plates 1, 2, 3, 4, 6, 10, 11, 12, 13, 14, 16, 17, 19, 20, 21, 25, 28, 29, 33, 39, 44, 47, 48, 49, 50, 52, 53, and 54) for which R2 ≥ 0.91 and B ≥ 2 (see Methods).
Cell viability in a total of 4965 [=54(8×9 + 4×5) − 3] well measures were obtained in this study, excluding three defective measures involving C on plate j, specifically for: {i,j} = {1,30}, {5,16}, and {8,15}. For the “best-fit” subset of 28 plates, the corresponding total number of well measures is 2351.
Summary of adjusted viability data ().a
| i | Ci (μM) | All plates ( | Plates with R2 ≥ 0.91 and | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Mean (%) | SEM (%) | N | padj | Mean (%) | SEM (%) | N | padj | ||
| 1 | 0.25 | 107.2 | 1.85 | 13 | 0.935 | 108.7 | 1.92 | 6 | 0.910 |
| 2 | 0.50 | 108.2 | 2.29 | 28 | 0.930 | 108.6 | 1.47 | 16 | 0.910 |
| 3 | 1 | 104.2 | 1.61 | 38 | 0.376 | 104.4 | 1.67 | 22 | 0.061 |
| 4 | 2 | 107.4 | 1.69 | 44 | 0.935 | 105.8 | 1.72 | 26 | 0.910 |
| 5 | 3 | 101.7 | 1.74 | 45 | 0.935 | 99.6 | 1.62 | 26 | 0.910 |
| 6 | 4 | 103.1 | 1.65 | 46 | 0.890 | 100.7 | 1.41 | 26 | 0.910 |
| 7 | 5 | 96.4 | 1.44 | 50 | 0.935 | 97.2 | 1.28 | 28 | 0.910 |
| 8 | 7 | 94.5 | 1.46 | 51 | 0.041 | 92.7 | 1.56 | 28 | 0.027 |
| 9 | 10 | 88.9 | 1.82 | 53 | 0.935 | 86.2 | 1.99 | 28 | 0.910 |
| 10 | 15 | 55.2 | 2.66 | 54 | 0.935 | 63.4 | 3.67 | 28 | 0.051 |
| 11 | 20 | 36.6 | 2.54 | 54 | 0.935 | 28.3 | 3.06 | 28 | 0.910 |
| 12 | 25 | 5.21 | 1.50 | 54 | 0.547 | 3.50 | 1.63 | 28 | 0.910 |
| 13 | 30 | 3.40 | 0.79 | 54 | 0.001 | 3.47 | 0.79 | 28 | 0.062 |
Mean = weighted arithmetic mean of adjusted percent-viability data using inverse estimated variances as weights; C = ith test concentration of AsIII; SEM = standard error of the mean; N = # plates from which data at concentration C were averaged (only concentrations i = i through i = 13 were included from each jth plate—see Methods and Table 1); padj = p-value of Shapiro-Wilk test of approximate normality of estimated weighted means, adjusted for 13 independent tests. Mean values are shown to ≥0.1% accuracy or 3 significant digits, and SEM values to ≥0.01% accuracy.
See Table 1.
Fig. 1Observed viability data (open points) and corresponding LNS-model fit (dashed curve) for plate #4, compared to data values (solid points) that are all adjusted to reflect this fitted model with assumed parameter values of P = Po = 0 (solid curve).
Fig. 2Model fits to adjusted viability data from all 54 plates (top plot), and from 28 plates for which the LNS model yielded fits (to corresponding unadjusted data sets) that are all relatively predictive (R2 ≥ 0.91) and have relatively steep initial slopes (b ≥ 2—see Table 1) (bottom plot). Error bars denote ±1 SEM. Fitted models shown in each plot are: lognormal (dashed curve), cubic-hormetic (solid curve), and cubic (dotted curve, which nearly coincides with the dashed and solid curve at C ≤ 3 μM and C ≥ 4 μM, respectively).
Model fits to adjusted viability data ().a
| Model | Plates included | Parameter | Estimate | SE | p=0 | R2 | pfit |
|---|---|---|---|---|---|---|---|
| LN | 54 | GM | 15.77 | 0.705 | <10−9 | 0.979 | ∼0 |
| GSD | 1.435 | 0.061 | ∼0 | ||||
| LN | 28 | GM | 15.30 | 0.860 | <10−8 | 0.977 | ∼0 |
| GSD | 1.442 | 0.070 | ∼0 | ||||
| Cubic | 54 | 1.500 | 0.154 | <10−8 | 0.983 | ∼0 | |
| 28 | 1.612 | 0.208 | <10−5 | 0.986 | ∼0 | ||
| LC | 54 | 2.889 | 3.93 | 0.48 | 0.983 | ∼0 | |
| 1.603 | 0.218 | 10−5 | |||||
| 28 | 1.695 | 4.20 | 0.69 | 0.986 | ∼0 | ||
| 1.681 | 0.280 | <10−4 | |||||
| HC | 54 | 1.207 | 8.99 | 0.90 | 0.992 | <10−5 | |
| 0.1678 | 18.9 | 0.99 | |||||
| 1.502 | 0.116 | 10−7 | |||||
| 28 | 1.053 | 1.69 | 0.55 | 0.995 | 0.0008 | ||
| 0.7963 | 4.24 | 0.19 | |||||
| 1.681 | 0.116 | <10−6 |
Models LN, Cubic, LC, and HC are defined by Equations 4–7, respectively (Methods). those labeled without units are unitless. SE = standard error; p0 = p-value from a t-test of the null hypotheses that the parameter value is zero (values ≤10−10 are listed as ∼0); R2 = squared coefficient of correlation (fraction of variance explained by regression); pfit = p-value of chi-square goodness of fit test. Parameter and SE estimates are rounded to 4 and at least 3 significant digits, respectively.
See Table 2.