| Literature DB >> 28959242 |
Bing Li1, Shiyi Yang2, Haiqing Chu1,3, Zhemin Zhang1, Weijia Liu2, Liulin Luo4, Wei Ma5, Xiaogang Xu6.
Abstract
This study aimed to determine the antibiotic susceptibility and resistance related genotypes of Mycobacterium abscessus. One hundred sixty-two clinical isolates were collected. Genomic data were obtained by whole genome sequencing. Single nucleotide polymorphism (SNP) analysis was conducted using the NCBI GenBank database and BLAST algorithm. The following genes were of interest: erm(41), rrl and rrs. Erm(41) was further divided into 3 sequevars: erm(41)C28, erm(41)T28, and M type [erm(41) with deletions in nucleotides 64 and 65, or 159 through 432]. Antibiotic susceptibility was assessed at 3 days (early reading time, ERT) and 14 days (late reading time, LRT) after clarithromycin (CLA) treatment. Three patterns of CLA resistance were observed. (1) Fifty-five (acquired resistance) isolates [45 erm(41)T28, 1 erm(41)C28 and 9 M type] exhibited MIC ≥8 mg/L at ERT; among these isolates, 10 had an rrl 2058/2059 mutation. (2) Sixty-two subsp. abscessus and 2 subsp. massiliense (induced resistance) isolates exhibited MIC ≤4 mg/L at ERT, but ≥8 mg/L at LRT. (3) Forty-three (sensitive and intermediate) isolates [14 erm(41)C28, 1 erm(41)T28, and 28 M type] exhibited MIC ≤4 mg/L at both ERT and LRT. No rrs 1408 mutation or other meaningful SNP was found in 3 amikacin-resistant isolates. No correlation was found between rrl, erm(41) or rrs and susceptibility to the 8 other antibiotics tested. The rrl and erm(41) genotypes could predict the CLA resistance of M. abscessus clinical isolates. China has a large number of CLA-resistant M. abscessus isolates with erm(41)T28 sequevar. Treatment of M. abscessus infections should be based upon a comprehensive consideration of factors that include genotype and geographic location.Entities:
Keywords: Mycobacterium abscessus; clarithromycin; genotype; microorganism; resistance
Year: 2017 PMID: 28959242 PMCID: PMC5603792 DOI: 10.3389/fmicb.2017.01739
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Antibiotic resistance of all M. abscessus isolates.
| CLA (resistant before induction) | ≤2 | 4 | ≥8 | 1(6.7) | 45(41.7) | 9(23.1) |
| CLA (resistant after induction) | ≤2 | 4 | ≥8 | 1(6.7) | 107(99.1) | 11(28.2) |
| AMI (amikacin) | ≤16 | 32 | ≥64 | 1(6.7) | 2(1.9) | 0(0.0) |
| SXT (sulfonamides) | ≤2 | nrb | ≥4 | 7(46.7) | 61(56.5) | 25(64.1) |
| MXF(moxifloxacin) | ≤1 | 2 | ≥4 | 15(100.0) | 107(99.1) | 38(97.4) |
| FOX (cefoxitin) | ≤16 | 32–64 | ≥128 | 12(80.0) | 67(62.0) | 27(69.2) |
| DOX (doxycycline) | ≤1 | 2–4 | ≥8 | 15(100.0) | 107(99.1) | 39(100) |
| TGC (tigecycline) | ≤1 | nrb | nrb | nd | nd | nd |
| LZD (linezolid) | ≤8 | 16 | ≥32 | 8(53.3) | 50(46.3) | 15(38.5) |
| IMI (imipenem) | ≤4 | 8–16 | ≥32 | 15(100.0) | 103(95.4) | 38(97.4) |
| TOB (tobramycin) | ≤2 | 4 | ≥8 | 15(100.0) | 94(87.0) | 38(97.4) |
The erm(41) sequevar-dependent resistance of 162 M. abscessus isolates to the antibiotic indicated was determined by the microdilution method. The incubation time was 3 days (before induction) and 14 days (after induction) for CLA, and 3 days for the other antibiotics listed.
no recommended breakpoint.
no data.
The effects of M. abscessus subtype, erm(41) sequevar and incubation time on the MIC values of CLA.
| 0.06 | 7 | 2 | 0 | 0 | 0 | 0 | 7 | 2 |
| 0.12 | 9 | 13 | 0 | 0 | 4 | 1 | 5 | 12 |
| 0.16 | 2 | 1 | 0 | 0 | 1 | 0 | 1 | 1 |
| 0.25 | 9 | 6 | 3 | 0 | 0 | 3 | 6 | 3 |
| 0.5 | 23 | 11 | 9 | 1 | 6 | 4 | 8 | 6 |
| 1 | 24 | 9 | 19 | 0 | 3 | 5 | 2 | 4 |
| 2 | 21 | 1 | 21 | 0 | 0 | 1 | 0 | 0 |
| 4 | 12 | 0 | 11 | 0 | 0 | 0 | 1 | 0 |
| 8 | 14 | 1 | 14 | 0 | 0 | 0 | 0 | 1 |
| 16 | 41 | 118 | 31 | 107 | 1 | 1 | 9 | 10 |
| ≤2( | 95(0) | 43 | 52(0) | 1 | 14(0) | 14 | 29(0) | 28 |
| ≤4( | 107(0) | 43 | 63(0) | 1 | 14(0) | 14 | 30(0) | 28 |
| ≥8( | 55(10) | 119 | 45(2) | 107 | 1(1) | 1 | 9(7) | 11 |
(rrl mut) Number of stains with rrl 2058/2059 mutation.
Distribution and CLA susceptibility patterns among M. abscessus genotypes.
| China | 162 | 108 | 15 | 39 | 10 | 18.2% (10/55) | 96.9% (62/64) | 0 | 3.1% (2/64) | 2.3 (1/43) | 32.6% (14/43) | 65.1% (28/43) |
Genotypes include erm(41)C28, erm(41)T28, M type, and rrl 2058/2059 mutation (rrl mut).
Sensitive/intermediate at ERT, but resistant at LRT.