Literature DB >> 28945480

Myriad Applications of Circulating Cell-Free DNA in Precision Organ Transplant Monitoring.

Philip Burnham1, Kiran Khush2,3, Iwijn De Vlaminck1.   

Abstract

Solid organ transplantation remains the preferred treatment for many end-stage organ diseases, but complications due to acute rejection and infection occur frequently and undermine its long-term benefits. Monitoring of the health of the allograft is therefore a critically important component of post-transplant therapy. Here, we review several emerging applications of circulating cell-free DNA (cfDNA) in the post-transplant monitoring of rejection, infection, and immunosuppression. We further discuss the cellular origins and salient biophysical properties of cfDNA. A property of cfDNA that has been prominent since its discovery in the late 1940s is its ability to yield surprises. We review recent insights into the epigenetic features of cfDNA that yet again provide novel opportunities for transplant monitoring.

Entities:  

Keywords:  cell-free DNA; diagnosis; infection; patient monitoring; rejection

Mesh:

Substances:

Year:  2017        PMID: 28945480      PMCID: PMC5711344          DOI: 10.1513/AnnalsATS.201608-634MG

Source DB:  PubMed          Journal:  Ann Am Thorac Soc        ISSN: 2325-6621


  30 in total

1.  Soluble donor DNA concentrations in recipient serum correlate with pancreas-kidney rejection.

Authors:  Vijayakrishna K Gadi; J Lee Nelson; Nicholas D Boespflug; Katherine A Guthrie; Christian S Kuhr
Journal:  Clin Chem       Date:  2006-01-05       Impact factor: 8.327

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Authors:  P MANDEL; P METAIS
Journal:  C R Seances Soc Biol Fil       Date:  1948-02

3.  Presence of donor-specific DNA in plasma of kidney and liver-transplant recipients.

Authors:  Y M Lo; M S Tein; C C Pang; C K Yeung; K L Tong; N M Hjelm
Journal:  Lancet       Date:  1998-05-02       Impact factor: 79.321

4.  Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.

Authors:  Matthew W Snyder; Martin Kircher; Andrew J Hill; Riza M Daza; Jay Shendure
Journal:  Cell       Date:  2016-01-14       Impact factor: 41.582

5.  Digital droplet PCR for rapid quantification of donor DNA in the circulation of transplant recipients as a potential universal biomarker of graft injury.

Authors:  Julia Beck; Sarah Bierau; Stefan Balzer; Reiner Andag; Philipp Kanzow; Jessica Schmitz; Jochen Gaedcke; Onnen Moerer; Jan E Slotta; Philip Walson; Otto Kollmar; Michael Oellerich; Ekkehard Schütz
Journal:  Clin Chem       Date:  2013-09-23       Impact factor: 8.327

6.  A rapid noninvasive assay for the detection of renal transplant injury.

Authors:  Tara K Sigdel; Matthew J Vitalone; Tim Q Tran; Hong Dai; Szu-Chuan Hsieh; Oscar Salvatierra; Minnie M Sarwal
Journal:  Transplantation       Date:  2013-07-15       Impact factor: 4.939

Review 7.  Emerging view of the human virome.

Authors:  Kristine M Wylie; George M Weinstock; Gregory A Storch
Journal:  Transl Res       Date:  2012-04-24       Impact factor: 7.012

8.  Monitoring pharmacologically induced immunosuppression by immune repertoire sequencing to detect acute allograft rejection in heart transplant patients: a proof-of-concept diagnostic accuracy study.

Authors:  Christopher Vollmers; Iwijn De Vlaminck; Hannah A Valantine; Lolita Penland; Helen Luikart; Calvin Strehl; Garrett Cohen; Kiran K Khush; Stephen R Quake
Journal:  PLoS Med       Date:  2015-10-14       Impact factor: 11.069

9.  Monitoring of transplanted liver health by quantification of organ-specific genomic marker in circulating DNA from receptor.

Authors:  Hada C Macher; Gonzalo Suárez-Artacho; Juan M Guerrero; Miguel A Gómez-Bravo; Sara Álvarez-Gómez; Carmen Bernal-Bellido; Inmaculada Dominguez-Pascual; Amalia Rubio
Journal:  PLoS One       Date:  2014-12-09       Impact factor: 3.240

10.  Single-stranded DNA library preparation uncovers the origin and diversity of ultrashort cell-free DNA in plasma.

Authors:  Philip Burnham; Min Seong Kim; Sean Agbor-Enoh; Helen Luikart; Hannah A Valantine; Kiran K Khush; Iwijn De Vlaminck
Journal:  Sci Rep       Date:  2016-06-14       Impact factor: 4.379

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  11 in total

Review 1.  A practical guide to chimerism analysis: Review of the literature and testing practices worldwide.

Authors:  Amanda G Blouin; Fei Ye; Jenifer Williams; Medhat Askar
Journal:  Hum Immunol       Date:  2021-08-14       Impact factor: 2.211

2.  Circulating Donor Heart Exosome Profiling Enables Noninvasive Detection of Antibody-mediated Rejection.

Authors:  Robert W Hu; Laxminarayana Korutla; Sanjana Reddy; Joey Harmon; Patrick D Zielinski; Alex Bueker; Maria Molina; Connie Romano; Ken Margulies; Rhondalyn McLean; Priti Lal; Prashanth Vallabhajosyula
Journal:  Transplant Direct       Date:  2020-10-19

3.  Analysis of recurrently protected genomic regions in cell-free DNA found in urine.

Authors:  Havell Markus; Jun Zhao; Tania Contente-Cuomo; Michelle D Stephens; Elizabeth Raupach; Ahuva Odenheimer-Bergman; Sydney Connor; Bradon R McDonald; Bethine Moore; Elizabeth Hutchins; Marissa McGilvrey; Michelina C de la Maza; Kendall Van Keuren-Jensen; Patrick Pirrotte; Ajay Goel; Carlos Becerra; Daniel D Von Hoff; Scott A Celinski; Pooja Hingorani; Muhammed Murtaza
Journal:  Sci Transl Med       Date:  2021-02-17       Impact factor: 19.319

4.  Circulating Unmethylated Insulin DNA As a Biomarker of Human Beta Cell Death: A Multi-laboratory Assay Comparison.

Authors:  Cate Speake; Alyssa Ylescupidez; Daniel Neiman; Ruth Shemer; Benjamin Glaser; Sarah A Tersey; Sahar Usmani-Brown; Pamela Clark; Joshua J Wilhelm; Melena D Bellin; Kevan C Herold; Raghavendra G Mirmira; Yuval Dor; Carmella Evans-Molina
Journal:  J Clin Endocrinol Metab       Date:  2020-03-01       Impact factor: 6.134

5.  Application of graft-derived cell-free DNA in ornithine transcarbamylase deficiency patient after living donor liver transplantation: Two case reports.

Authors:  Hoi-Ioi Ng; Li-Ying Sun; Zhi-Jun Zhu
Journal:  Medicine (Baltimore)       Date:  2018-12       Impact factor: 1.889

6.  Life and death of circulating cell-free DNA.

Authors:  Anatoli Kustanovich; Ruth Schwartz; Tamar Peretz; Albert Grinshpun
Journal:  Cancer Biol Ther       Date:  2019-04-16       Impact factor: 4.742

7.  Cell-Free DNA in Blood Reveals Significant Cell, Tissue and Organ Specific injury and Predicts COVID-19 Severity.

Authors:  Alexandre Pellan Cheng; Matthew Pellan Cheng; Wei Gu; Joan Sesing Lenz; Elaine Hsu; Erwin Schurr; Guillaume Bourque; Mathieu Bourgey; Jerome Ritz; Francisco Marty; Charles Y Chiu; Donald Cuong Vinh; Iwijn De Vlaminck
Journal:  medRxiv       Date:  2020-07-29

Review 8.  Current Trends in Applications of Circulatory Microchimerism Detection in Transplantation.

Authors:  Hajnalka Andrikovics; Zoltán Őrfi; Nóra Meggyesi; András Bors; Lívia Varga; Petra Kövy; Zsófia Vilimszky; Fanni Kolics; László Gopcsa; Péter Reményi; Attila Tordai
Journal:  Int J Mol Sci       Date:  2019-09-10       Impact factor: 5.923

Review 9.  Liquid biopsy for infectious diseases: a focus on microbial cell-free DNA sequencing.

Authors:  Dongsheng Han; Rui Li; Jiping Shi; Ping Tan; Rui Zhang; Jinming Li
Journal:  Theranostics       Date:  2020-04-07       Impact factor: 11.556

10.  Quantitative detection of circulating MT-ND1 as a potential biomarker for colorectal cancer.

Authors:  Yichun Xu; Jiajing Zhou; Qing Yuan; Jun Su; Qian Li; Xiaoliang Lu; Liwen Zhang; Zhai Cai; Junsong Han
Journal:  Bosn J Basic Med Sci       Date:  2021-10-01       Impact factor: 3.363

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