Literature DB >> 28937677

Synthesis and materialization of a reaction-diffusion French flag pattern.

Anton S Zadorin1,2, Yannick Rondelez3,4, Guillaume Gines3, Vadim Dilhas1,2, Georg Urtel5, Adrian Zambrano1,2, Jean-Christophe Galas1,2, André Estevez-Torres1,2.   

Abstract

During embryo development, patterns of protein concentration appear in response to morphogen gradients. These patterns provide spatial and chemical information that directs the fate of the underlying cells. Here, we emulate this process within non-living matter and demonstrate the autonomous structuration of a synthetic material. First, we use DNA-based reaction networks to synthesize a French flag, an archetypal pattern composed of three chemically distinct zones with sharp borders whose synthetic analogue has remained elusive. A bistable network within a shallow concentration gradient creates an immobile, sharp and long-lasting concentration front through a reaction-diffusion mechanism. The combination of two bistable circuits generates a French flag pattern whose 'phenotype' can be reprogrammed by network mutation. Second, these concentration patterns control the macroscopic organization of DNA-decorated particles, inducing a French flag pattern of colloidal aggregation. This experimental framework could be used to test reaction-diffusion models and fabricate soft materials following an autonomous developmental programme.

Year:  2017        PMID: 28937677     DOI: 10.1038/nchem.2770

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  43 in total

1.  The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules.

Authors:  Z J Gartner; D R Liu
Journal:  J Am Chem Soc       Date:  2001-07-18       Impact factor: 15.419

2.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

3.  Spatial waves in synthetic biochemical networks.

Authors:  Adrien Padirac; Teruo Fujii; André Estévez-Torres; Yannick Rondelez
Journal:  J Am Chem Soc       Date:  2013-06-20       Impact factor: 15.419

Review 4.  Turing's next steps: the mechanochemical basis of morphogenesis.

Authors:  Jonathon Howard; Stephan W Grill; Justin S Bois
Journal:  Nat Rev Mol Cell Biol       Date:  2011-06       Impact factor: 94.444

Review 5.  Hybrid lipid oligonucleotide conjugates: synthesis, self-assemblies and biomedical applications.

Authors:  Amit Patwa; Arnaud Gissot; Isabelle Bestel; Philippe Barthélémy
Journal:  Chem Soc Rev       Date:  2011-05-24       Impact factor: 54.564

6.  Synthesis of programmable reaction-diffusion fronts using DNA catalyzers.

Authors:  Anton S Zadorin; Yannick Rondelez; Jean-Christophe Galas; André Estevez-Torres
Journal:  Phys Rev Lett       Date:  2015-02-09       Impact factor: 9.161

7.  Bottom-up construction of in vitro switchable memories.

Authors:  Adrien Padirac; Teruo Fujii; Yannick Rondelez
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

8.  Programming an in vitro DNA oscillator using a molecular networking strategy.

Authors:  Kevin Montagne; Raphael Plasson; Yasuyuki Sakai; Teruo Fujii; Yannick Rondelez
Journal:  Mol Syst Biol       Date:  2011-02-01       Impact factor: 11.429

9.  Boosting functionality of synthetic DNA circuits with tailored deactivation.

Authors:  Kevin Montagne; Guillaume Gines; Teruo Fujii; Yannick Rondelez
Journal:  Nat Commun       Date:  2016-11-15       Impact factor: 14.919

10.  Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors.

Authors:  Svetlana Surkova; Alexander V Spirov; Vitaly V Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E Vanario-Alonso; David H Sharp; Maria Samsonova; John Reinitz
Journal:  PLoS Comput Biol       Date:  2009-03-13       Impact factor: 4.475

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  23 in total

1.  Tunable corrugated patterns in an active nematic sheet.

Authors:  Anis Senoussi; Shunnichi Kashida; Raphael Voituriez; Jean-Christophe Galas; Ananyo Maitra; André Estevez-Torres
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-14       Impact factor: 11.205

2.  Standardized excitable elements for scalable engineering of far-from-equilibrium chemical networks.

Authors:  Samuel W Schaffter; Kuan-Lin Chen; Jackson O'Brien; Madeline Noble; Arvind Murugan; Rebecca Schulman
Journal:  Nat Chem       Date:  2022-08-04       Impact factor: 24.274

Review 3.  Dissipative DNA nanotechnology.

Authors:  Erica Del Grosso; Elisa Franco; Leonard J Prins; Francesco Ricci
Journal:  Nat Chem       Date:  2022-06-06       Impact factor: 24.274

4.  Programmable synthetic cell networks regulated by tuneable reaction rates.

Authors:  Adrian Zambrano; Giorgio Fracasso; Mengfei Gao; Martina Ugrinic; Dishi Wang; Dietmar Appelhans; Andrew deMello; T-Y Dora Tang
Journal:  Nat Commun       Date:  2022-07-06       Impact factor: 17.694

5.  Nucleic Acid Strand Displacement with Synthetic mRNA Inputs in Living Mammalian Cells.

Authors:  Gourab Chatterjee; Yuan-Jyue Chen; Georg Seelig
Journal:  ACS Synth Biol       Date:  2018-11-20       Impact factor: 5.110

6.  Design of localized spatiotemporal pH patterns by means of antagonistic chemical gradients.

Authors:  Brigitta Dúzs; István Szalai
Journal:  RSC Adv       Date:  2018-12-13       Impact factor: 3.361

7.  Spatiotemporal control of DNA-based chemical reaction network via electrochemical activation in microfluidics.

Authors:  Ievgen Kurylo; Guillaume Gines; Yannick Rondelez; Yannick Coffinier; Alexis Vlandas
Journal:  Sci Rep       Date:  2018-04-23       Impact factor: 4.379

8.  Artificial Gel-Based Organelles for Spatial Organization of Cell-Free Gene Expression Reactions.

Authors:  Lukas Aufinger; Friedrich C Simmel
Journal:  Angew Chem Int Ed Engl       Date:  2018-11-27       Impact factor: 15.336

9.  A small-molecule chemical interface for molecular programs.

Authors:  Vasily A Shenshin; Camille Lescanne; Guillaume Gines; Yannick Rondelez
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

10.  Synchrony and pattern formation of coupled genetic oscillators on a chip of artificial cells.

Authors:  Alexandra M Tayar; Eyal Karzbrun; Vincent Noireaux; Roy H Bar-Ziv
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-16       Impact factor: 11.205

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