Literature DB >> 25723247

Synthesis of programmable reaction-diffusion fronts using DNA catalyzers.

Anton S Zadorin1, Yannick Rondelez2, Jean-Christophe Galas1, André Estevez-Torres1.   

Abstract

We introduce a DNA-based reaction-diffusion (RD) system in which reaction and diffusion terms can be precisely and independently controlled. The effective diffusion coefficient of an individual reaction component, as we demonstrate on a traveling wave, can be reduced up to 2.7-fold using a self-assembled hydrodynamic drag. The intrinsic programmability of this RD system allows us to engineer, for the first time, orthogonal autocatalysts that counterpropagate with minimal interaction. Our results are in excellent quantitative agreement with predictions of the Fisher-Kolmogorov-Petrovskii-Piscunov model. These advances open the way for the rational engineering of pattern formation in pure chemical RD systems.

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Year:  2015        PMID: 25723247     DOI: 10.1103/PhysRevLett.114.068301

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  16 in total

1.  Microscopic agents programmed by DNA circuits.

Authors:  G Gines; A S Zadorin; J-C Galas; T Fujii; A Estevez-Torres; Y Rondelez
Journal:  Nat Nanotechnol       Date:  2017-01-30       Impact factor: 39.213

2.  Synthesis and materialization of a reaction-diffusion French flag pattern.

Authors:  Anton S Zadorin; Yannick Rondelez; Guillaume Gines; Vadim Dilhas; Georg Urtel; Adrian Zambrano; Jean-Christophe Galas; André Estevez-Torres
Journal:  Nat Chem       Date:  2017-05-01       Impact factor: 24.427

3.  Programmable synthetic cell networks regulated by tuneable reaction rates.

Authors:  Adrian Zambrano; Giorgio Fracasso; Mengfei Gao; Martina Ugrinic; Dishi Wang; Dietmar Appelhans; Andrew deMello; T-Y Dora Tang
Journal:  Nat Commun       Date:  2022-07-06       Impact factor: 17.694

Review 4.  Viewpoint: From Responsive to Adaptive and Interactive Materials and Materials Systems: A Roadmap.

Authors:  Andreas Walther
Journal:  Adv Mater       Date:  2019-11-25       Impact factor: 30.849

5.  Temporal Control of Gelation and Polymerization Fronts Driven by an Autocatalytic Enzyme Reaction.

Authors:  Elizabeth Jee; Tamás Bánsági; Annette F Taylor; John A Pojman
Journal:  Angew Chem Weinheim Bergstr Ger       Date:  2016-01-06

6.  Boosting functionality of synthetic DNA circuits with tailored deactivation.

Authors:  Kevin Montagne; Guillaume Gines; Teruo Fujii; Yannick Rondelez
Journal:  Nat Commun       Date:  2016-11-15       Impact factor: 14.919

7.  Programmable autonomous synthesis of single-stranded DNA.

Authors:  Jocelyn Y Kishi; Thomas E Schaus; Nikhil Gopalkrishnan; Feng Xuan; Peng Yin
Journal:  Nat Chem       Date:  2017-11-06       Impact factor: 24.427

8.  Free-standing supramolecular hydrogel objects by reaction-diffusion.

Authors:  Matija Lovrak; Wouter E J Hendriksen; Chandan Maity; Serhii Mytnyk; Volkert van Steijn; Rienk Eelkema; Jan H van Esch
Journal:  Nat Commun       Date:  2017-07-05       Impact factor: 14.919

9.  Temporal Control of Gelation and Polymerization Fronts Driven by an Autocatalytic Enzyme Reaction.

Authors:  Elizabeth Jee; Tamás Bánsági; Annette F Taylor; John A Pojman
Journal:  Angew Chem Int Ed Engl       Date:  2016-01-06       Impact factor: 15.336

10.  Synchrony and pattern formation of coupled genetic oscillators on a chip of artificial cells.

Authors:  Alexandra M Tayar; Eyal Karzbrun; Vincent Noireaux; Roy H Bar-Ziv
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-16       Impact factor: 11.205

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