Literature DB >> 28937663

A metallo-DNA nanowire with uninterrupted one-dimensional silver array.

Jiro Kondo1,2, Yoshinari Tada2, Takenori Dairaku3, Yoshikazu Hattori4, Hisao Saneyoshi5, Akira Ono5, Yoshiyuki Tanaka4.   

Abstract

The double-helix structure of DNA, in which complementary strands reversibly hybridize to each other, not only explains how genetic information is stored and replicated, but also has proved very attractive for the development of nanomaterials. The discovery of metal-mediated base pairs has prompted the generation of short metal-DNA hybrid duplexes by a bottom-up approach. Here we describe a metallo-DNA nanowire-whose structure was solved by high-resolution X-ray crystallography-that consists of dodecamer duplexes held together by four different metal-mediated base pairs (the previously observed C-Ag-C, as well as G-Ag-G, G-Ag-C and T-Ag-T) and linked to each other through G overhangs involved in interduplex G-Ag-G. The resulting hybrid nanowires are 2 nm wide with a length of the order of micrometres to millimetres, and hold the silver ions in uninterrupted one-dimensional arrays along the DNA helical axis. The hybrid nanowires are further assembled into three-dimensional lattices by interactions between adenine residues, fully bulged out of the double helix.

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Year:  2017        PMID: 28937663     DOI: 10.1038/nchem.2808

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  38 in total

1.  Crystal structure of d(GCGAAAGCT) containing a parallel-stranded duplex with homo base pairs and an anti-parallel duplex with Watson-Crick base pairs.

Authors:  Tomoko Sunami; Jiro Kondo; Tomonori Kobuna; Ichiro Hirao; Kimitsuna Watanabe; Kin-ichiro Miura; Akio Takénaka
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

3.  Chemistry: Metals line up for DNA.

Authors:  Jens Müller
Journal:  Nature       Date:  2006-12-07       Impact factor: 49.962

4.  Controlled stacking of 10 transition-metal ions inside a DNA duplex.

Authors:  Guido H Clever; Thomas Carell
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  DNA--metal base pairs.

Authors:  Guido H Clever; Corinna Kaul; Thomas Carell
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

6.  Specific interactions between silver(I) ions and cytosine-cytosine pairs in DNA duplexes.

Authors:  Akira Ono; Shiqi Cao; Humika Togashi; Mitsuru Tashiro; Takashi Fujimoto; Tomoya Machinami; Shuji Oda; Yoko Miyake; Itaru Okamoto; Yoshiyuki Tanaka
Journal:  Chem Commun (Camb)       Date:  2008-08-22       Impact factor: 6.222

7.  A QM/MM refinement of an experimental DNA structure with metal-mediated base pairs.

Authors:  Sadhana Kumbhar; Silke Johannsen; Roland K O Sigel; Mark P Waller; Jens Müller
Journal:  J Inorg Biochem       Date:  2013-03-28       Impact factor: 4.155

8.  Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA.

Authors:  Barbara A Schweitzer; Eric T Kool
Journal:  J Am Chem Soc       Date:  1995-02-22       Impact factor: 15.419

9.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16
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  28 in total

1.  Silver(I)-mediated base pairing in parallel-stranded DNA involving the luminescent cytosine analog 1,3-diaza-2-oxophenoxazine.

Authors:  Isabell Schönrath; Vladimir B Tsvetkov; Timofei S Zatsepin; Andrey V Aralov; Jens Müller
Journal:  J Biol Inorg Chem       Date:  2019-07-01       Impact factor: 3.358

2.  DNA as UV light-harvesting antenna.

Authors:  Ivan L Volkov; Zakhar V Reveguk; Pavel Yu Serdobintsev; Ruslan R Ramazanov; Alexei I Kononov
Journal:  Nucleic Acids Res       Date:  2018-04-20       Impact factor: 16.971

3.  Atomic Structure of a Fluorescent Ag8 Cluster Templated by a Multistranded DNA Scaffold.

Authors:  Dustin J E Huard; Aida Demissie; Dahye Kim; David Lewis; Robert M Dickson; Jeffrey T Petty; Raquel L Lieberman
Journal:  J Am Chem Soc       Date:  2019-01-02       Impact factor: 15.419

4.  Forced Intercalation (FIT)-Aptamers.

Authors:  Sasha B Ebrahimi; Devleena Samanta; Ho Fung Cheng; Levy I Nathan; Chad A Mirkin
Journal:  J Am Chem Soc       Date:  2019-08-23       Impact factor: 15.419

5.  A dissipative pathway for the structural evolution of DNA fibres.

Authors:  Felix J Rizzuto; Casey M Platnich; Xin Luo; Yao Shen; Michael D Dore; Christophe Lachance-Brais; Alba Guarné; Gonzalo Cosa; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2021-08-09       Impact factor: 24.427

6.  Nanowired Bioelectric Interfaces.

Authors:  Bozhi Tian; Charles M Lieber
Journal:  Chem Rev       Date:  2019-04-17       Impact factor: 60.622

7.  Quantitative Analysis of DNA-Mediated Formation of Metal Nanocrystals.

Authors:  Yiming Wang; Michael J Counihan; Jeffrey Wayjer Lin; Joaquín Rodríguez-López; Hong Yang; Yi Lu
Journal:  J Am Chem Soc       Date:  2020-11-18       Impact factor: 16.383

8.  Footprints of Nanoscale DNA-Silver Cluster Chromophores via Activated-Electron Photodetachment Mass Spectrometry.

Authors:  Molly S Blevins; Dahye Kim; Christopher M Crittenden; Soonwoo Hong; Hsin-Chih Yeh; Jeffrey T Petty; Jennifer S Brodbelt
Journal:  ACS Nano       Date:  2019-11-27       Impact factor: 15.881

9.  Large-scale investigation of the effects of nucleobase sequence on fluorescence excitation and Stokes shifts of DNA-stabilized silver clusters.

Authors:  Stacy M Copp; Anna Gonzàlez-Rosell
Journal:  Nanoscale       Date:  2021-03-04       Impact factor: 7.790

10.  Controllable DNA strand displacement by independent metal-ligand complexation.

Authors:  Liang-Liang Wang; Qiu-Long Zhang; Yang Wang; Yan Liu; Jiao Lin; Fan Xie; Liang Xu
Journal:  Chem Sci       Date:  2021-05-18       Impact factor: 9.825

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