Literature DB >> 28932431

Isomorphous crystal structures of chlorodi-acetyl-ene and iododi-acetyl-ene derivatives: simultaneous hydrogen and halogen bonds on carbon-yl.

Pierre Baillargeon1, Tarik Rahem1, Édouard Caron-Duval1, Jacob Tremblay1, Cloé Fortin1, Étienne Blais1, Victor Fan1, Daniel Fortin2, Yves L Dory3.   

Abstract

The crystal structures of tert-butyl (5-chloro-penta-2,4-diyn-1-yl)carbamate, <span class="Chemical">C10H12ClNO2 (II), and tert-butyl (5-iodo-penta-2,4-diyn-1-yl)carbamate, C10H12INO2 (IV), are isomorphous to previously reported structures and accordingly their mol-ecular and supra-molecular structures are similar. In the crystals of (II) and (IV), mol-ecules are linked into very similar two-dimensional wall organizations with anti-parallel carbamate groups involved in a combination of hydrogen and halogen bonds (bifurcated N-H⋯O=C and C≡C-X⋯O=C inter-actions on the same carbonyl group). There is no long-range parallel stacking of diynes, so the topochemical polymerization of di-acetyl-ene is prevented. A Cambridge Structural Database search revealed that C≡C-X⋯O=C contacts shorter than the sum of the van der Waals radii are scarce (only one structure for the C≡C-Cl⋯O=C inter-action and 13 structures for the similar C≡C-I⋯O=C inter-action).

Entities:  

Keywords:  chlorodi­acetyl­ene; crystal structure; halogen bond; hydrogen bond; iododi­acetyl­ene

Year:  2017        PMID: 28932431      PMCID: PMC5598843          DOI: 10.1107/S2056989017010155

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Hydrogen bonds (HBs) and <span class="Chemical">halogen bonds (XBs) are considered to be useful noncovalent synthetic tools in crystal engineering (Aakeröy et al., 2015 ▸; Grabowski, 2016 ▸; Resnati et al., 2015 ▸; Cinčić et al., 2008 ▸). Indeed, these directional inter­molecular inter­actions facilitate the preparation of the desired solid-state motifs and architectures (Gilday et al., 2015 ▸; Cavallo et al., 2016 ▸; Priimagi et al., 2013 ▸; Mukherjee et al., 2014 ▸; Shirman et al., 2015 ▸; Mukherjee et al., 2017 ▸). For example, using HBs and XBs, the specific organization of terminal di­acetyl­enes (Li et al., 2009 ▸; Ouyang et al., 2003 ▸), bromodi­acetyl­enes (Jin et al., 2015 ▸) and iododi­acetyl­enes (Jin et al., 2013 ▸; Sun et al., 2006 ▸) has been obtained to achieve the solid-state topochemical polymerization of di­acetyl­enes. On the other hand, to the best of our knowledge, no chlorodi­acetyl­ene topochemical polymerizations have been reported. Our results show that chlorodi­acetyl­ene (II) is isostructural to iododi­acetyl­ene (IV) and the previously reported bromodi­acetyl­ene (III) and terminal di­acetyl­ene (I) (Baillargeon et al., 2016 ▸) (see Scheme). Although the arrangement of diynes in the present article stands no chance of undergoing topochemical polymerization, we suggest that in other systems prone to polymerization, replacing Br, I or H atoms by Cl atoms in their diyne groups might result in successful PolyChloroDi­Acetyl­ene (PCDA) formation as well. This work also contributes to an emerging research theme, namely the concept of orthogonal mol­ecular inter­actions such as HBs and XBs (Kratzer et al., 2015 ▸; Takemura et al., 2014 ▸; Voth et al., 2009 ▸), which may find applications in medicinal chemistry and chemical biology (Wilcken et al., 2013 ▸).

Structural commentary

The mol­ecular structures of compounds (II) and (IV) are shown in Fig. 1 ▸. All bond lengths and angles are within normal ranges. For example, the inter­nal diyne C2—C3 bonds lengths [1.376 (3) Å for (II) and 1.385 (4) Å for (IV)] follow the useful rule of thumb describing a C—C single-bond distance (1.54 Å) decreasing by 0.04 Å each time one of the participating C atoms changes hybridization from sp 3 to sp 2 or from sp 2 to sp (Bent, 1961 ▸). Moreover, the observed distances are almost identical to those found recently in the literature for similar <span class="Chemical">halodiynes (Hoheisel et al., 2013 ▸; Baillargeon et al., 2016 ▸). The relative orientation between the di­acetyl­enic moiety and the carbamate functional group can be established by the absolute value of the torsion angles C4—C5—N1—C6 [111.07 (19)°] for (II) and [103.8 (3)°] for (IV).
Figure 1

The mol­ecular structure of (A) compound (II) and (B) compound (IV), showing the atom-labelling schemes. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as fixed-size spheres of 0.30 Å.

Supra­molecular features

In the crystals of compounds (II) and (IV), mol­ecules are linked via an N—H⋯O=C hydrogen bond between their respective <span class="Chemical">carbamate functionalities [N1—H1⋯O1i (Table 1 ▸) and N1—H1⋯O2i (Table 2 ▸)], generating an anti­parallel stacking pattern which orients the di­acetyl­ene skeleton on each side of the one-dimensional carbamate tape (parts B and D in Fig. 2 ▸). For both crystals, the simultaneous presence of halogen and hydrogen bonds with the carbamate O atom have been found. Indeed, additional halogen-bond inter­actions occur with the carbamate O atom [Cl1⋯O1ii for (II) and I1⋯O2ii for (IV)], resulting in an infinite two-dimensional network that can be considered as polar supra­molecular walls. This arrangement is similar to our previous work (Baillargeon et al., 2016 ▸) on the terminal di­acetyl­ene (I) (part A in Fig. 2 ▸) and the bromodi­acetyl­ene (III) (part C in Fig. 2 ▸). In fact, diynes (I)–(IV) (Fig. 2 ▸) constitute a complete set of truly isomorphous crystals that can be carefully examined to evaluate the differences and similarities that exist between halogen and hydrogen bonds. Thus, the X⋯O⋯H angle increases as the size of the halogen atom becomes larger. This angle, which is pretty open in the chlorine crystal (II) (Cl1⋯O1⋯H1; part B in Fig. 2 ▸; 69°) adopts a near orthogonal geometry with the iodine (I1⋯O2⋯H1; part D in Fig. 2 ▸; 83°). It is not a surprise that the bromine crystal (III) represents an inter­mediate case (part C in Fig. 2 ▸; 72°). The value for the terminal di­acetyl­ene (I) X = H (part A in Fig. 2 ▸; 76°) is closely related to the bromodi­acetyl­ene (Baillargeon et al., 2016 ▸).
Table 1

Hydrogen-bond and halogen-bond geometries (Å, °) for (II)

DXA DX XA DA DXA
N1—H1⋯O1i 0.882.092.934 (2)162
C1—Cl1⋯O1ii 1.665 (2)3.127 (2)4.792 (3)179.01 (7)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond and halogen-bond geometries (Å, °) for (IV)

DXA DX XA DA DXA
N1—H1⋯O2i 0.882.042.881 (2)160
C1—I1⋯O2ii 1.999 (2)2.945 (2)4.919 (3)168.31 (8)

Symmetry codes: (i) ; (ii) .

Figure 2

Halogen (green lines) and/or hydrogen bonds (blue lines) inside the supra­molecular walls of (A) diyne (I), (B) chloro­diyne (II), (C) bromo­diyne (III) and (D) iodo­diyne (IV). The nonpolar H atoms have been omitted for clarity.

Database survey

A survey of the Cambridge Structural Database (Conquest Version 1.19; CSD, Version 5.38, November 2016 plus 3 updates; Groom et al., 2016 ▸) furnished 404 hits of terminal <span class="Chemical">alkynes CC—H having close contacts with carbonyl O=C (shorter than the sum of their van der Waals radii). On the other hand, similar contacts from halogenoalkyne analogs are scarce (1 hit for the chloro­alkyne, 4 hits for the bromo­alkyne and 13 hits for the iodo­alkyne; Table 3 ▸). For the iodo­alkyne, results are limited to monovalent iodine and for a structure in which the carbonyl group is not involved in an organometallic complex.
Table 3

CSD data (Groom et al., 2016 ▸) retrieved for the C≡C—X⋯O=C contacts shorter than the sum of their van der Waals radii

C≡C—X⋯O=C contactsCSD refcodeSpace group X⋯O distance (Å)C—X⋯O angle (°)Reference
C≡C—Cl⋯O=CNIDWAA P 3.111; 3.241152.59; 158.76Kawai et al. (2013)
C≡C—Br⋯O=CHEVWAI C22.959158.12Hoheisel et al. (2013)
C≡C—Br⋯O=CHEVWAI01 P212121 2.966166.70Hoheisel et al. (2013)
C≡C—Br⋯O=CNIDWII P21/n 2.867171.11Kawai et al. (2013)
C≡C—Br⋯O=CKAMXII P21/c 3.060178.26Baillargeon et al. (2016)
C≡C—I⋯O=CCOHYUU P 3.096164.55Luo et al. (2008)
C≡C—I⋯O=CIYAYUC Pca21 2.861170.36Hou et al. (2004)
C≡C—I⋯O=CMASVUZ P21/n 2.834; 2.887170.72; 172.97Perkins et al. (2012)
C≡C—I⋯O=CTOYPUS P21/c 2.933175.36Avtomonov et al. (1997)
C≡C—I⋯O=CHOWXIC P21/c 2.887169.51Dumele et al. (2014)
C≡C—I⋯O=CLUNKOW P2/c 2.791174.12Kratzer et al. (2015)
C≡C—I⋯O=CLUNKUC P21/c 2.754172.63Kratzer et al. (2015)
C≡C—I⋯O=CLUNLAJ P21/c 2.773173.70Kratzer et al. (2015)
C≡C—I⋯O=CLUNLIR Pca21 2.858170.94Kratzer et al. (2015)
C≡C—I⋯O=CLUNLOX C2/c 2.763175.58Kratzer et al. (2015)
C≡C—I⋯O=CIBUYAI P21/m 2.856177.96Dumele et al. (2017)
C≡C—I⋯O=CIBUYOW P21/c 2.830176.52Dumele et al. (2017)
C≡C—I⋯O=CIBUYUC P 2.878177.89Dumele et al. (2017)

Synthesis and crystallization

Compound (II)

Tetra-n-butylammonium fluoride (<span class="Chemical">TBAF, 0.437 ml, 1 M in THF, 0.437 mmol), AgNO3 (39 mg, 0.23 mmol) and NCS (190 mg, 1.42 mmol) were added to a solution of BocNHCH2—C≡C—C≡C—TMS (183 mg, 0.728 mmol) in aceto­nitrile (3 ml) at room temperature. The resulting mixture was stirred for 2.5 h under N2 in the absence of light. Purification of the crude product by flash chromatography on silica gel, eluting with mixtures of Hex/DCM/Et2O (gradient from 9:1:1 to 1:1:1), provided compound (II) as a beige solid (yield 72 mg, 46%). Single crystals suitable for X-ray diffraction were prepared by diffusion of pentane into a chloro­form solution of (II) at 263 K. R F = 0.43 (2:1:1 Hex/DCM/Et2O); IR (UATR, ν, cm−1): 3326, 2977, 2920, 2255, 2168, 1673, 1531, 1421, 1368, 1278, 1248, 1222, 1158, 1143, 1042, 1028, 933, 849, 761, 718, 655; 1H NMR (400 MHz, CDCl3): δ 4.72 (br, 1H), 3.99 (d, 2H), 1.45 (s, 9H); HRMS (m/z): calculated for C10H12ClNNaO2 [MNa+]: 236.0449, found: 236.0448.

Compound (IV)

TBAF (0.437 ml, 1 M in <span class="Chemical">THF, 0.437 mmol), AgNO3 (39 mg, 0.23 mmol) and NIS (328 mg, 1.46 mmol) were added to a solution of BocNHCH2—C≡C—C≡C—TMS (183 mg, 0.728 mmol) in aceto­nitrile (3 ml) at room temperature. The resulting mixture was stirred for 2.5 h under N2 in the absence of light. Purification of the crude product by flash chromatography on silica gel, eluting with mixtures of Hex/DCM/Et2O (gradient from 9:1:1 to 1:1:1) provided compound (IV) as a beige solid (yield 95 mg, 43%). Single crystals suitable for X-ray diffraction were prepared by slow evaporation from a chloro­form solution of (IV) at room temperature. R F = 0.48 (2:1:1 Hex/DCM/Et2O); IR (UATR, ν, cm−1): 3328, 2980, 2933, 2230, 2159, 1661, 1532, 1451, 1420, 1367, 1284, 1250, 1154, 1142, 1042, 1026, 929, 851, 762, 714, 647; 1H NMR (400 MHz, CDCl3): δ 4.73 (br, 1H), 4.02 (d, 2H), 1.44 (s, 9H).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 4 ▸.
Table 4

Experimental details

 (II)(IV)
Crystal data
Chemical formulaC10H12ClNO2 C10H12INO2
M r 213.66305.11
Crystal system, space groupMonoclinic, P21/c Monoclinic, P21/n
Temperature (K)173173
a, b, c (Å)10.336 (3), 9.171 (3), 11.870 (3)11.1587 (16), 9.0288 (13), 12.9899 (18)
β (°)100.656 (5)108.731 (2)
V3)1105.8 (5)1239.4 (3)
Z 44
Radiation typeMo KαMo Kα
μ (mm−1)0.322.56
Crystal size (mm)0.34 × 0.22 × 0.020.36 × 0.3 × 0.28
 
Data collection
DiffractometerBruker APEXIIBruker APEXII
Absorption correctionMulti-scan (SADABS; Bruker, 2008)Multi-scan (SADABS; Bruker, 2008)
T min, T max 0.66, 0.7450.675, 0.745
No. of measured, independent and observed [I > 2σ(I)] reflections16132, 2249, 175517970, 2532, 2342
R int 0.0450.02
(sin θ/λ)max−1)0.6250.626
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.036, 0.089, 1.060.022, 0.054, 1.08
No. of reflections22492532
No. of parameters130130
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.22, −0.211.32, −0.69

Computer programs: APEX2 (Bruker, 2008 ▸), SAINT (Bruker, 2008 ▸), SORTAV (Blessing, 1995 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2016 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), Mercury (Macrae et al., 2006 ▸), WinGX (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) global, II, IV. DOI: 10.1107/S2056989017010155/mw2133sup1.cif Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989017010155/mw2133IIsup2.hkl Structure factors: contains datablock(s) IV. DOI: 10.1107/S2056989017010155/mw2133IVsup3.hkl CCDC references: 1551031, 1551032 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H12ClNO2F(000) = 448
Mr = 213.66Dx = 1.283 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8841 reflections
a = 10.336 (3) Åθ = 2.8–26.4°
b = 9.171 (3) ŵ = 0.32 mm1
c = 11.870 (3) ÅT = 173 K
β = 100.656 (5)°Plate, orange
V = 1105.8 (5) Å30.34 × 0.22 × 0.02 mm
Z = 4
Bruker APEXII diffractometer2249 independent reflections
Radiation source: sealed x-ray tube1755 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
φ or ω oscillation scansθmax = 26.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −12→12
Tmin = 0.66, Tmax = 0.745k = −11→11
16132 measured reflectionsl = −9→14
Refinement on F20 constraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.089w = 1/[σ2(Fo2) + (0.0397P)2 + 0.2863P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2249 reflectionsΔρmax = 0.22 e Å3
130 parametersΔρmin = −0.21 e Å3
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.40035 (19)0.0211 (2)0.15762 (16)0.0343 (4)
C20.50716 (18)−0.0266 (2)0.15615 (16)0.0336 (4)
C30.63096 (19)−0.0798 (2)0.15309 (16)0.0336 (4)
C40.73990 (19)−0.1223 (2)0.15037 (16)0.0334 (4)
C50.87519 (17)−0.1687 (2)0.14761 (17)0.0339 (4)
H5A0.882935−0.2748280.162430.041*
H5B0.894345−0.1505690.0701250.041*
C61.04144 (17)−0.15939 (19)0.32333 (15)0.0271 (4)
C71.22986 (18)−0.11065 (19)0.47967 (15)0.0304 (4)
C81.1748 (2)−0.1841 (2)0.57483 (17)0.0439 (5)
H8A1.106364−0.1223680.5970470.066*
H8B1.245644−0.1989550.6411320.066*
H8C1.136913−0.2786180.5479230.066*
C91.32333 (19)−0.2075 (2)0.42986 (18)0.0408 (5)
H9A1.278745−0.2988150.402990.061*
H9B1.400577−0.2289710.4889020.061*
H9C1.351283−0.157660.3653710.061*
C101.2953 (2)0.0332 (2)0.52078 (19)0.0449 (5)
H10A1.3241360.0827150.4565270.067*
H10B1.3717350.0144140.5813780.067*
H10C1.2323650.0951150.5509160.067*
Cl10.24981 (4)0.08590 (5)0.15756 (4)0.03061 (14)
N10.97160 (14)−0.09282 (16)0.23144 (13)0.0314 (4)
H10.9847660.0007390.2215510.038*
O11.03225 (13)−0.28874 (13)0.34594 (11)0.0361 (3)
O21.12149 (12)−0.06256 (12)0.38708 (11)0.0311 (3)
U11U22U33U12U13U23
C10.0342 (11)0.0349 (11)0.0334 (11)−0.0009 (9)0.0055 (8)0.0009 (8)
C20.0337 (11)0.0333 (10)0.0323 (11)−0.0036 (8)0.0019 (8)0.0007 (8)
C30.0333 (11)0.0300 (10)0.0346 (11)−0.0005 (8)−0.0011 (8)0.0016 (8)
C40.0339 (11)0.0279 (10)0.0350 (11)−0.0023 (8)−0.0028 (8)−0.0006 (8)
C50.0309 (10)0.0311 (10)0.0368 (11)0.0013 (8)−0.0014 (8)−0.0030 (8)
C60.0264 (9)0.0222 (9)0.0323 (10)−0.0014 (7)0.0045 (7)−0.0023 (7)
C70.0311 (10)0.0269 (10)0.0299 (10)0.0017 (8)−0.0026 (8)0.0021 (8)
C80.0524 (13)0.0429 (12)0.0369 (12)0.0014 (10)0.0091 (10)0.0049 (9)
C90.0344 (11)0.0415 (12)0.0451 (13)0.0056 (9)0.0037 (9)0.0019 (9)
C100.0468 (13)0.0339 (11)0.0462 (13)−0.0041 (10)−0.0121 (10)−0.0007 (9)
Cl10.0268 (2)0.0320 (3)0.0337 (3)0.00451 (19)0.00733 (18)0.00090 (19)
N10.0303 (8)0.0220 (8)0.0381 (9)−0.0024 (7)−0.0036 (7)0.0013 (7)
O10.0409 (8)0.0217 (7)0.0427 (8)−0.0034 (6)0.0003 (6)0.0014 (6)
O20.0314 (7)0.0220 (7)0.0358 (8)−0.0009 (5)−0.0049 (6)−0.0006 (5)
C1—C21.191 (3)C6—N11.339 (2)
C1—Cl11.666 (2)C6—O21.347 (2)
C2—C31.376 (3)C7—O21.484 (2)
C3—C41.198 (3)C7—C91.511 (3)
C4—C51.468 (3)C7—C81.513 (3)
C5—N11.449 (2)C7—C101.521 (3)
C6—O11.224 (2)
C2—C1—Cl1178.9 (2)O2—C7—C9109.55 (15)
C1—C2—C3179.0 (2)O2—C7—C8110.41 (15)
C4—C3—C2178.2 (2)C9—C7—C8112.70 (16)
C3—C4—C5177.8 (2)O2—C7—C10102.12 (14)
N1—C5—C4112.49 (16)C9—C7—C10110.89 (17)
O1—C6—N1124.66 (17)C8—C7—C10110.67 (17)
O1—C6—O2125.48 (17)C6—N1—C5122.64 (16)
N1—C6—O2109.86 (15)C6—O2—C7121.42 (13)
O1—C6—N1—C50.3 (3)N1—C6—O2—C7−166.78 (14)
O2—C6—N1—C5−178.98 (15)C9—C7—O2—C659.3 (2)
C4—C5—N1—C6111.1 (2)C8—C7—O2—C6−65.4 (2)
O1—C6—O2—C713.9 (3)C10—C7—O2—C6176.85 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.882.092.935162
C1—Cl1···O1ii1.673.134.793179
C10H12INO2F(000) = 592
Mr = 305.11Dx = 1.635 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9940 reflections
a = 11.1587 (16) Åθ = 2.3–26.4°
b = 9.0288 (13) ŵ = 2.56 mm1
c = 12.9899 (18) ÅT = 173 K
β = 108.731 (2)°Prism, yellow
V = 1239.4 (3) Å30.36 × 0.3 × 0.28 mm
Z = 4
Bruker APEXII diffractometer2532 independent reflections
Radiation source: sealed x-ray tube2342 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.02
φ or ω oscillation scansθmax = 26.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −12→13
Tmin = 0.675, Tmax = 0.745k = −11→11
17970 measured reflectionsl = −15→16
Refinement on F20 constraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.022H-atom parameters constrained
wR(F2) = 0.054w = 1/[σ2(Fo2) + (0.0203P)2 + 1.7447P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
2532 reflectionsΔρmax = 1.32 e Å3
130 parametersΔρmin = −0.69 e Å3
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.2157 (2)1.0340 (3)0.3437 (2)0.0328 (6)
C20.3210 (2)1.0012 (3)0.34873 (19)0.0304 (5)
C30.4425 (2)0.9623 (3)0.35280 (19)0.0279 (5)
C40.5465 (2)0.9286 (3)0.35525 (19)0.0275 (5)
C50.6760 (2)0.8938 (3)0.35692 (19)0.0282 (5)
H5A0.7367040.9270890.426910.034*
H5B0.6848330.7850760.3521720.034*
C60.7111 (2)0.8882 (2)0.18051 (19)0.0219 (4)
C70.7579 (3)0.9226 (3)0.0094 (2)0.0344 (6)
C80.7976 (4)1.0622 (3)−0.0367 (3)0.0511 (8)
H8A0.7304691.136625−0.0498320.077*
H8B0.8123861.038609−0.1053070.077*
H8C0.8756161.1012120.0152780.077*
C90.6338 (4)0.8624 (4)−0.0654 (3)0.0559 (9)
H9A0.6112520.772368−0.0336980.084*
H9B0.6425080.839113−0.1363370.084*
H9C0.5671950.936832−0.0745870.084*
C100.8637 (3)0.8100 (4)0.0377 (3)0.0506 (8)
H10A0.9364430.8492220.0958070.076*
H10B0.8887030.789497−0.026660.076*
H10C0.8346260.7182480.0622970.076*
N10.7077 (2)0.9636 (2)0.26832 (16)0.0263 (4)
H10.7252561.0589130.2724550.032*
O10.73962 (17)0.97953 (18)0.11063 (13)0.0272 (4)
O20.69111 (17)0.75519 (18)0.16743 (14)0.0289 (4)
I10.04221 (2)1.09875 (2)0.33737 (2)0.03907 (7)
U11U22U33U12U13U23
C10.0294 (14)0.0398 (14)0.0301 (13)0.0020 (11)0.0106 (10)0.0027 (11)
C20.0333 (14)0.0328 (13)0.0263 (12)−0.0012 (11)0.0110 (10)0.0031 (10)
C30.0312 (14)0.0309 (13)0.0250 (11)−0.0015 (10)0.0139 (10)0.0011 (10)
C40.0337 (14)0.0284 (12)0.0236 (11)−0.0036 (10)0.0135 (10)0.0005 (9)
C50.0298 (13)0.0321 (13)0.0259 (12)0.0007 (10)0.0132 (10)0.0032 (10)
C60.0180 (11)0.0216 (11)0.0271 (11)0.0013 (8)0.0087 (9)0.0020 (9)
C70.0490 (17)0.0323 (13)0.0293 (13)−0.0017 (12)0.0229 (12)−0.0034 (10)
C80.085 (3)0.0407 (17)0.0437 (17)−0.0055 (16)0.0430 (18)0.0016 (13)
C90.067 (2)0.065 (2)0.0325 (15)−0.0141 (18)0.0106 (15)−0.0046 (15)
C100.065 (2)0.0415 (17)0.063 (2)0.0074 (15)0.0446 (18)−0.0051 (15)
N10.0334 (11)0.0215 (10)0.0304 (10)−0.0039 (8)0.0191 (9)−0.0015 (8)
O10.0396 (10)0.0196 (8)0.0293 (9)0.0004 (7)0.0209 (7)0.0004 (7)
O20.0348 (10)0.0197 (8)0.0352 (9)−0.0030 (7)0.0157 (8)−0.0001 (7)
I10.02499 (10)0.04928 (12)0.04157 (11)0.00657 (8)0.00878 (7)0.00614 (8)
C1—C21.193 (4)C7—C91.514 (4)
C1—I11.999 (3)C7—C81.521 (4)
C2—C31.385 (4)C8—H8A0.98
C3—C41.191 (4)C8—H8B0.98
C4—C51.472 (3)C8—H8C0.98
C5—N11.452 (3)C9—H9A0.98
C5—H5A0.99C9—H9B0.98
C5—H5B0.99C9—H9C0.98
C6—O21.223 (3)C10—H10A0.98
C6—O11.338 (3)C10—H10B0.98
C6—N11.340 (3)C10—H10C0.98
C7—O11.486 (3)N1—H10.88
C7—C101.512 (4)
C2—C1—I1177.3 (3)H8A—C8—H8B109.5
C1—C2—C3179.1 (3)C7—C8—H8C109.5
C4—C3—C2179.4 (3)H8A—C8—H8C109.5
C3—C4—C5177.4 (3)H8B—C8—H8C109.5
N1—C5—C4112.5 (2)C7—C9—H9A109.5
N1—C5—H5A109.1C7—C9—H9B109.5
C4—C5—H5A109.1H9A—C9—H9B109.5
N1—C5—H5B109.1C7—C9—H9C109.5
C4—C5—H5B109.1H9A—C9—H9C109.5
H5A—C5—H5B107.8H9B—C9—H9C109.5
O2—C6—O1125.7 (2)C7—C10—H10A109.5
O2—C6—N1124.3 (2)C7—C10—H10B109.5
O1—C6—N1110.00 (19)H10A—C10—H10B109.5
O1—C7—C10109.6 (2)C7—C10—H10C109.5
O1—C7—C9109.6 (2)H10A—C10—H10C109.5
C10—C7—C9113.4 (3)H10B—C10—H10C109.5
O1—C7—C8101.7 (2)C6—N1—C5122.3 (2)
C10—C7—C8110.5 (3)C6—N1—H1118.8
C9—C7—C8111.5 (3)C5—N1—H1118.8
C7—C8—H8A109.5C6—O1—C7121.17 (18)
C7—C8—H8B109.5
O2—C6—N1—C5−1.7 (4)N1—C6—O1—C7175.9 (2)
O1—C6—N1—C5178.5 (2)C10—C7—O1—C6−58.9 (3)
C4—C5—N1—C6−103.9 (3)C9—C7—O1—C666.1 (3)
O2—C6—O1—C7−3.9 (4)C8—C7—O1—C6−175.8 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.882.042.881160
C1—I1···O2ii2.002.954.919168
  22 in total

1.  Halogen bonding of (iodoethynyl)benzene derivatives in solution.

Authors:  Oliver Dumele; Dino Wu; Nils Trapp; Nancy Goroff; François Diederich
Journal:  Org Lett       Date:  2014-08-29       Impact factor: 6.005

2.  Halogen-Bonded Supramolecular Capsules in the Solid State, in Solution, and in the Gas Phase.

Authors:  Oliver Dumele; Benedikt Schreib; Ulrike Warzok; Nils Trapp; Christoph A Schalley; François Diederich
Journal:  Angew Chem Int Ed Engl       Date:  2016-12-21       Impact factor: 15.336

3.  Halogen bonds in crystal engineering: like hydrogen bonds yet different.

Authors:  Arijit Mukherjee; Srinu Tothadi; Gautam R Desiraju
Journal:  Acc Chem Res       Date:  2014-05-29       Impact factor: 22.384

4.  Poly(diiododiacetylene): preparation, isolation, and full characterization of a very simple poly(diacetylene).

Authors:  Liang Luo; Christopher Wilhelm; Aiwu Sun; Clare P Grey; Joseph W Lauher; Nancy S Goroff
Journal:  J Am Chem Soc       Date:  2008-05-20       Impact factor: 15.419

5.  Synthesis of the Stable Ordered Conjugated Polymer Poly(dibromodiacetylene) from an Explosive Monomer.

Authors:  Hongjian Jin; Christopher N Young; Gary P Halada; Brian L Phillips; Nancy S Goroff
Journal:  Angew Chem Int Ed Engl       Date:  2015-10-08       Impact factor: 15.336

6.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

7.  Two-dimensional crystal engineering using halogen and hydrogen bonds: towards structural landscapes.

Authors:  Arijit Mukherjee; Joan Teyssandier; Gunther Hennrich; Steven De Feyter; Kunal S Mali
Journal:  Chem Sci       Date:  2017-03-16       Impact factor: 9.825

Review 8.  The Halogen Bond.

Authors:  Gabriella Cavallo; Pierangelo Metrangolo; Roberto Milani; Tullio Pilati; Arri Priimagi; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Chem Rev       Date:  2016-01-26       Impact factor: 60.622

9.  A systematic structural study of halogen bonding versus hydrogen bonding within competitive supramolecular systems.

Authors:  Christer B Aakeröy; Christine L Spartz; Sean Dembowski; Savannah Dwyre; John Desper
Journal:  IUCrJ       Date:  2015-07-30       Impact factor: 4.769

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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